AT5G02630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.953 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Lung seven transmembrane receptor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Lung seven transmembrane receptor family protein; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT5G18520.1); Has 463 Blast hits to 460 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 268; Fungi - 2; Plants - 160; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:591798..593084 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48885.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.42 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.62 | ||||||||||||||||||||||||||||||||
| Length | 428 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTILPFLAAV FVLQLLSTLT VAEIKSFTIS NDSRPVILLE KFGIIEIGHV TVSVSSVSVL SPILDSSKLG FFVLSEESLP HVLLELQQNF SFCVLDSHYI 101: LHFFTFVDLS PPPRSQFSKS YPITSPNDYS LFFANCVPET RVSMKVHTEI YHDLYPNGSR DYLLAGSAQL PGLYLVFFLC YLSFLCFWLC FCWNHKQIVK 201: RIHLLMTALL LVKSLTLICA AVYKHYVKVT GTAHGWNIVF YIFQFISVVL LFMVIVLIGN GWSFLKPKLH VKEKKLLVIV VPLQVLANIA SIVIGETGPY 301: TQDWVSWNQI FFLADITCCC AIVFAMVWSM CCLRETSKTD GKAVKNLAKL PVLRKFYVLV IGYLFFTRIV VVVMKMKADF TYQWVSNAAE EIATLSFYCL 401: MFYMFRPIEK NEYCDVDDEE EIVELSLK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)