AT4G39230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.604 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NmrA-like negative transcriptional regulator family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: phenylcoumaran benzylic ether reductase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 1665 Blast hits to 1661 proteins in 371 species: Archae - 16; Bacteria - 474; Metazoa - 2; Fungi - 521; Plants - 522; Viruses - 3; Other Eukaryotes - 127 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18266024..18267604 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34073.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||
| Length | 308 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSKSKILFI GGTGYIGKYI VEASARSGHP TLVLVRNSTL TSPSRSSTIE NFKNLGVQFL LGDLDDHTSL VNSIKQADVV ISTVGHSLLG HQYKIISAIK 101: EAGNVKRFFP SEFGNDVDRV FTVEPAKSAY ATKAKIRRTI EAEGIPYTYV SCNFFAGYFL PTLAQPGATS APRDKVIVLG DGNPKAVFNK EEDIGTYTIN 201: AVDDPRTLNK ILYIRPPMNT YSFNDLVSLW ENKIGKTLER IYVPEEQLLK QIIESSPPLN VMLSLCHCVF VKGGHTSFEI EPSFGVEASE LYPDVKYTTV 301: DEILNQYV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)