AT5G39785.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1666) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT1G69610.1); Has 521 Blast hits to 476 proteins in 101 species: Archae - 0; Bacteria - 15; Metazoa - 89; Fungi - 60; Plants - 93; Viruses - 4; Other Eukaryotes - 260 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15929257..15932215 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71047.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.82 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||
| Length | 606 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIELENSGIE DEEEVSESPK LVFKFAFQTE TFERLSREGY RSLSDDCGVE SESSFLSSDS SPVIFTAAAR KYETPSAKNL TFVLENPKAA TFRVEDCLKE 101: KQEKTEDLGY SVFHGEDKVK TEDYSVSSFK KKKIRFLTEE DFLESDSDFV DSSQTFTSND EDGFLSDSDF AETSLKKGQN RKSDNSGSGS DSEEEEEEDT 201: NGFESLWEHQ DLIEQLKMEM KKVKAIGGLT TILEEEEEDD DCPKIMEDLK PWRIEEEKKF KHVDTIGEVH KFHRSYRERM RKLDILSFQK SYALGLLQSK 301: SPQQATSTLG SNPSQTSFSS VFSVNIRLWK AKKSEIEPMV QFVKEIQGEL ENVYVGQMCL SWEILHWQYE KAIELLESDV YGSRRYNEVA GEFQQFQVLL 401: QRFLENEPFE EPRVQHYIKR RCVLRNLLQI PVIREDGNKD KKNGRRRDYE ENNDGVIKSD QLVEIMEETI RLFWRFVRCD KLTSSIHDQK SRTKSQIEPD 501: HEEDSEDLEM FAEVKSQLQN KEKRLRDVLK SERCIIRRFQ KHKEEDSTED QVLHFFSQVD MKLVTRVLNM SKLTRDHLVW CHNKLTKINF VNRRLHLDPS 601: FCLFPC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)