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AT5G39785.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1666)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT1G69610.1); Has 521 Blast hits to 476 proteins in 101 species: Archae - 0; Bacteria - 15; Metazoa - 89; Fungi - 60; Plants - 93; Viruses - 4; Other Eukaryotes - 260 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHINeggNOG:ENOG410YEEEEMBL:AB016876EMBL:AY070102
EMBL:AY117164EMBL:CP002688EnsemblPlants:AT5G39785EnsemblPlants:AT5G39785.1
entrez:833974ExpressionAtlas:Q9FIW8GeneID:833974GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT5G39785.1hmmpanther:PTHR10759
hmmpanther:PTHR10759:SF1HOGENOM:HOG000131632InterPro:IPR008195InterPro:IPR012870
ncoils:CoilPANTHER:PTHR10759Pfam:PF07891PhylomeDB:Q9FIW8
Proteomes:UP000006548RefSeq:NP_851107.1TAIR:AT5G39785UniGene:At.28393
UniProt:Q9FIW8
Coordinates (TAIR10) chr5:+:15929257..15932215
Molecular Weight (calculated) 71047.20 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.81
Length 606 amino acids
Sequence (TAIR10)
(BLAST)
001: MIELENSGIE DEEEVSESPK LVFKFAFQTE TFERLSREGY RSLSDDCGVE SESSFLSSDS SPVIFTAAAR KYETPSAKNL TFVLENPKAA TFRVEDCLKE
101: KQEKTEDLGY SVFHGEDKVK TEDYSVSSFK KKKIRFLTEE DFLESDSDFV DSSQTFTSND EDGFLSDSDF AETSLKKGQN RKSDNSGSGS DSEEEEEEDT
201: NGFESLWEHQ DLIEQLKMEM KKVKAIGGLT TILEEEEEDD DCPKIMEDLK PWRIEEEKKF KHVDTIGEVH KFHRSYRERM RKLDILSFQK SYALGLLQSK
301: SPQQATSTLG SNPSQTSFSS VFSVNIRLWK AKKSEIEPMV QFVKEIQGEL ENVYVGQMCL SWEILHWQYE KAIELLESDV YGSRRYNEVA GEFQQFQVLL
401: QRFLENEPFE EPRVQHYIKR RCVLRNLLQI PVIREDGNKD KKNGRRRDYE ENNDGVIKSD QLVEIMEETI RLFWRFVRCD KLTSSIHDQK SRTKSQIEPD
501: HEEDSEDLEM FAEVKSQLQN KEKRLRDVLK SERCIIRRFQ KHKEEDSTED QVLHFFSQVD MKLVTRVLNM SKLTRDHLVW CHNKLTKINF VNRRLHLDPS
601: FCLFPC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)