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AT4G30350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57710.1); Has 16030 Blast hits to 14793 proteins in 2754 species: Archae - 27; Bacteria - 12697; Metazoa - 12; Fungi - 280; Plants - 607; Viruses - 0; Other Eukaryotes - 2407 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0542eggNOG:KOG1051EMBL:AL161576EMBL:CP002687
EnsemblPlants:AT4G30350EnsemblPlants:AT4G30350.1entrez:829158Gene3D:1.10.1780.10
Gene3D:3.40.50.300GeneID:829158GO:GO:0006351GO:GO:0006355
GO:GO:0007623GO:GO:0019538GO:GO:1902347Gramene:AT4G30350.1
hmmpanther:PTHR11638hmmpanther:PTHR11638:SF94HOGENOM:HOG000242659InterPro:IPR004176
InterPro:IPR027417KEGG:ath:AT4G30350OMA:AITECKHPaxDb:Q9M0C5
PhylomeDB:Q9M0C5PIR:H85354ProteinModelPortal:Q9M0C5Proteomes:UP000006548
RefSeq:NP_194764.1SMR:Q9M0C5STRING:3702.AT4G30350.1SUPFAM:SSF52540
SUPFAM:SSF81923TAIR:AT4G30350UniGene:At.23371UniProt:Q9M0C5
Coordinates (TAIR10) chr4:+:14848031..14850973
Molecular Weight (calculated) 101401.00 Da
IEP (calculated) 7.63
GRAVY (calculated) -0.32
Length 924 amino acids
Sequence (TAIR10)
(BLAST)
001: MRADLITIQQ TLTPEAATVL NQSIAEATRR NHGHTTPLHV AATLLSSSSG YLRQACIKSH PNSSHPLQCR ALELCFSVAL ERLPTTSTTT TTTSSSSSSS
101: PSQTQEPLLS NALTAALKRA QAHQRRGCPE QQQQPLLAVK VELEQLIISI LDDPSVSRVM REASFSSPAV KSAIEQSLIG NSVSNSRQTG SPGIINPSAI
201: GFGYRSVPAP VNRNLYLNPR LQQPGVGMQS GMMIQRTDEA KRVIEIMIRT RKRNPVLVGD SEPHILVKEI LEKIENGEFS DGALRNFQVI RLEKELVSQL
301: ATRLGEISGL VETRIGGGGV VLDLGDLKWL VEHPAANGGA VVEMRKLLER YKGRLCFIGT ATCETYLRCQ VYYPSMENDW DLQAIPIAAK SSLPAIFPRL
401: GSNNNNNAML LSNNIISIES ISPTRSFQIP MSKMSCCSRC LQSYENDVAK VEKDLTGDNR SVLPQWLQNA KANDDGDKKL TKDQQIVELQ KKWNDLCLRL
501: HPNQSVSERI APSTLSMMKI NTRSDITPPG SPVGTDLVLG RPNRGLSSPE KKTREARFGK LGDSFDIDLF KKLLKGLAKS VWWQHDAASS VAAAITECKH
601: GNGKSKGDIW LMFTGPDRAG KSKMASALSD LVSGSQPITI SLGSSSRMDD GLNIRGKTAL DRFAEAVRRN PFAVIVLEDI DEADILLRNN VKIAIERGRI
701: CDSYGREVSL GNVIIILTAN SSLGSAKNVA SIDETRLESL VNKGWELRLS VCNSSKTRKR KPNWLYSDND QTKQRKEICF DLNEAAEFDS SSDVTVEHDQ
801: EDNGNLVHKL VGLVDDAILF RPVDFDSIKS KTAESLKKRF SNGLADGLTV EIEDDALERI AGAIWLSKIS LEEWLEEAMG SSLNSVKSRV SSSEDSVIRI
901: ELEDDLNDRI SGGYLPSSIR TVVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)