AT2G32240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13684614..13689330 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 148622.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.42 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||||||||||
| Length | 1333 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEATQVTSS EVPVVKGDVD DLKTADISVK AVNGEVPKEE KEEEDGEFIK VEKEAFDAKD DAEKADHVPV EEQKEVIERS SSGSQRELHE SQEKAKELEL 0101: ELERVAGELK RYESENTHLK DELLSAKEKL EETEKKHGDL EVVQKKQQEK IVEGEERHSS QLKSLEDALQ SHDAKDKELT EVKEAFDALG IELESSRKKL 0201: IELEEGLKRS AEEAQKFEEL HKQSASHADS ESQKALEFSE LLKSTKESAK EMEEKMASLQ QEIKELNEKM SENEKVEAAL KSSAGELAAV QEELALSKSR 0301: LLETEQKVSS TEALIDELTQ ELEQKKASES RFKEELSVLQ DLDAQTKGLQ AKLSEQEGIN SKLAEELKEK ELLESLSKDQ EEKLRTANEK LAEVLKEKEA 0401: LEANVAEVTS NVATVTEVCN ELEEKLKTSD ENFSKTDALL SQALSNNSEL EQKLKSLEEL HSEAGSAAAA ATQKNLELED VVRSSSQAAE EAKSQIKELE 0501: TKFTAAEQKN AELEQQLNLL QLKSSDAERE LKELSEKSSE LQTAIEVAEE EKKQATTQMQ EYKQKASELE LSLTQSSARN SELEEDLRIA LQKGAEHEDR 0601: ANTTHQRSIE LEGLCQSSQS KHEDAEGRLK DLELLLQTEK YRIQELEEQV SSLEKKHGET EADSKGYLGQ VAELQSTLEA FQVKSSSLEA ALNIATENEK 0701: ELTENLNAVT SEKKKLEATV DEYSVKISES ENLLESIRNE LNVTQGKLES IENDLKAAGL QESEVMEKLK SAEESLEQKG REIDEATTKR MELEALHQSL 0801: SIDSEHRLQK AMEEFTSRDS EASSLTEKLR DLEGKIKSYE EQLAEASGKS SSLKEKLEQT LGRLAAAESV NEKLKQEFDQ AQEKSLQSSS ESELLAETNN 0901: QLKIKIQELE GLIGSGSVEK ETALKRLEEA IERFNQKETE SSDLVEKLKT HENQIEEYKK LAHEASGVAD TRKVELEDAL SKLKNLESTI EELGAKCQGL 1001: EKESGDLAEV NLKLNLELAN HGSEANELQT KLSALEAEKE QTANELEASK TTIEDLTKQL TSEGEKLQSQ ISSHTEENNQ VNAMFQSTKE ELQSVIAKLE 1101: EQLTVESSKA DTLVSEIEKL RAVAAEKSVL ESHFEELEKT LSEVKAQLKE NVENAATASV KVAELTSKLQ EHEHIAGERD VLNEQVLQLQ KELQAAQSSI 1201: DEQKQAHSQK QSELESALKK SQEEIEAKKK AVTEFESMVK DLEQKVQLAD AKTKETEAMD VGVKSRDIDL SFSSPTKRKS KKKPEASLSS SSSSGNVTTP 1301: TQTASTSHLM TVKIVTGVAL ISVIIGIILG RKY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)