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AT1G09940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30875866 (2019): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glutamyl-tRNA reductase family protein
Curator
Summary (TAIR10)
Encodes glutamyl-tRNA reductase. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins
Computational
Description (TAIR10)
HEMA2; FUNCTIONS IN: glutamyl-tRNA reductase activity; INVOLVED IN: response to oxidative stress, heme biosynthetic process, tetrapyrrole biosynthetic process, porphyrin biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, conserved site (InterPro:IPR018214), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal (InterPro:IPR015896), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase (InterPro:IPR000343), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal (InterPro:IPR015895); BEST Arabidopsis thaliana protein match is: Glutamyl-tRNA reductase family protein (TAIR:AT1G58290.1); Has 5044 Blast hits to 5020 proteins in 1819 species: Archae - 226; Bacteria - 3662; Metazoa - 1; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 934 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G09940-MONOMERBioCyc:MetaCyc:AT1G09940-MONOMEREC:1.2.1.70eggNOG:COG0373
EMBL:AC000132EMBL:AK228651EMBL:BT023439EMBL:CP002684
EMBL:U27118EnsemblPlants:AT1G09940EnsemblPlants:AT1G09940.1entrez:837528
Gene3D:3.40.50.720GeneID:837528Genevisible:P49294GO:GO:0006782
GO:GO:0006783GO:GO:0006979GO:GO:0008883GO:GO:0009507
GO:GO:0009536GO:GO:0015995GO:GO:0033014GO:GO:0050661
Gramene:AT1G09940.1gramene_pathway:1.2.1.70gramene_pathway:PWY-5188HAMAP:MF_00087
hmmpanther:PTHR13812hmmpanther:PTHR13812:SF20HOGENOM:HOG000109651InParanoid:P49294
InterPro:IPR000343InterPro:IPR006151InterPro:IPR015895InterPro:IPR015896
InterPro:IPR016040InterPro:IPR018214KEGG:00860+1.2.1.70KEGG:ath:AT1G09940
KO:K02492OMA:GMDSMILPaxDb:P49294Pfam:P49294
Pfam:PF00745Pfam:PF01488Pfam:PF05201PhylomeDB:P49294
PIR:G86233PIR:S65773PRIDE:P49294PRO:PR:P49294
PROSITE:PS00747ProteinModelPortal:P49294Proteomes:UP000006548RefSeq:NP_172465.1
scanprosite:PS00747SMR:P49294STRING:3702.AT1G09940.1SUPFAM:0038205
SUPFAM:0047033SUPFAM:SSF51735SUPFAM:SSF69075SUPFAM:SSF69742
TAIR:AT1G09940tair10-symbols:HEMA2TIGRfam:TIGR01035TIGRFAMs:TIGR01035
UniGene:At.27711UniPathway:UPA00251UniPathway:UPA00668UniProt:P49294
Coordinates (TAIR10) chr1:-:3237224..3239262
Molecular Weight (calculated) 58295.10 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.13
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSSAFVVT PKLEKLLANH HNPTYSSSPA PLDVIGIRAL PMNNRNKRGL IQRARCEISP SNKAASISAL EQLKTSAIDR YTKERSSIVV IGLSIHTAPV
101: EMREKLAIPE AEWPRAIAEL CGLNHIEEAA VLSTCNRMEI YVLALSQHRG VKEVTEWMSK TSGIPVSEIC QHRFLLYNKD VTQHIFEVSA GLDSLVLGEG
201: QILAQVKQVV KVGQGVNGFG RNISGLFKHA ITVGKRVRTE TNIAAGAVSV SSAAVELALM KLPESSHASS ARMLVVGAGK MGKLVIKHLV AKGCTKMVVV
301: NRSEEKVAAV RNEMPPGVEI IYKPLDEMLS CAAEADVVFT STASETPLFL KEQVETLPPV RDARLFVDIS VPRNVGSCVA EIDGTRVFNV DDLKEVVAAN
401: KEDRVRKAMD AQAIITDESK HFEAWRDSLE TVPTIKKLRG YTERIIAAEI EKSLPKMGID MNKKMRKTVD DLIRGIVNKL LHGPMQHLRC DGNDSRTLSE
501: TLDNMQALNR MYGLDAEILE EKIRAKVEKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)