AT5G57710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.491 endoplasmic reticulum 0.333 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-2 (InterPro:IPR013093); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30350.1); Has 16657 Blast hits to 15152 proteins in 2785 species: Archae - 23; Bacteria - 13282; Metazoa - 28; Fungi - 336; Plants - 548; Viruses - 0; Other Eukaryotes - 2440 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23384794..23388052 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108716.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
| Length | 990 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRAGLSTIQQ TLTPEAATVL NQSIAEAARR NHGQTTPLHV AATLLASPAG FLRRACIRSH PNSSHPLQCR ALELCFSVAL ERLPTATTTP GNDPPISNAL 101: MAALKRAQAH QRRGCPEQQQ QPLLAVKVEL EQLIISILDD PSVSRVMREA SFSSPAVKAT IEQSLNNSVT PTPIPSVSSV GLNFRPGGGG PMTRNSYLNP 201: RLQQNASSVQ SGVSKNDDVE RVMDILGRAK KKNPVLVGDS EPGRVIREIL KKIEVGEVGN LAVKNSKVVS LEEISSDKAL RIKELDGLLQ TRLKNSDPIG 301: GGGVILDLGD LKWLVEQPSS TQPPATVAVE IGRTAVVELR RLLEKFEGRL WFIGTATCET YLRCQVYHPS VETDWDLQAV SVAAKAPASG VFPRLANNLE 401: SFTPLKSFVP ANRTLKCCPQ CLQSYERELA EIDSVSSPEV KSEVAQPKQL PQWLLKAKPV DRLPQAKIEE VQKKWNDACV RLHPSFHNKN ERIVPIPVPI 501: TLTTSPYSPN MLLRQPLQPK LQPNRELRER VHLKPMSPLV AEQAKKKSPP GSPVQTDLVL GRAEDSEKAG DVQVRDFLGC ISSESVQNNN NISVLQKENL 601: GNSLDIDLFK KLLKGMTEKV WWQNDAAAAV AATVSQCKLG NGKRRGVLSK GDVWLLFSGP DRVGKRKMVS ALSSLVYGTN PIMIQLGSRQ DAGDGNSSFR 701: GKTALDKIAE TVKRSPFSVI LLEDIDEADM LVRGSIKQAM DRGRIRDSHG REISLGNVIF VMTASWHFAG TKTSFLDNEA KLRDLASESW RLRLCMREKF 801: GKRRASWLCS DEERLTKPKK EHGSGLSFDL NQAADTDDGS HNTSDLTTDN DQDEQGFSGK LSLQCVPFAF HDMVSRVDDA VAFRAVDFAA VRRRITETLS 901: ERFETIIGES LSVEVEEEAL QRILSGVWLG QTELEEWIEK AIVPVLSQLK ARVSSSGTYG DCTVARLELD EDSGERNAGD LLPTTITLAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)