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AT1G78080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : related to AP2 4
Curator
Summary (TAIR10)
Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling.
Computational
Description (TAIR10)
related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
BioGrid:29362eggNOG:ENOG410IEJEeggNOG:ENOG410YGN6EMBL:AC009243
EMBL:AC012680EMBL:AF003097EMBL:AF370152EMBL:AY150468
EMBL:CP002684EnsemblPlants:AT1G78080EnsemblPlants:AT1G78080.1entrez:844143
Gene3D:3.30.730.10GeneID:844143Genevisible:Q8H1E4GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006970
GO:GO:0009409GO:GO:0009414GO:GO:0009416GO:GO:0009611
GO:GO:0009651GO:GO:0009736GO:GO:0009873GO:GO:0043565
GO:GO:0045595GO:GO:0071472Gramene:AT1G78080.1hmmpanther:PTHR31657
hmmpanther:PTHR31657:SF9HOGENOM:HOG000239817InParanoid:Q8H1E4IntAct:Q8H1E4
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G78080KO:K09286
MINT:MINT-7262714OMA:AICKSMAPaxDb:Q8H1E4Pfam:PF00847
Pfam:Q8H1E4Pfscan:PS51032PhylomeDB:Q8H1E4PRIDE:Q8H1E4
PRINTS:PR00367PRO:PR:Q8H1E4PROSITE:PS51032ProteinModelPortal:Q8H1E4
Proteomes:UP000006548RefSeq:NP_177931.1SMART:SM00380SMR:Q8H1E4
STRING:3702.AT1G78080.1SUPFAM:SSF54171TAIR:AT1G78080tair10-symbols:RAP2.4
UniGene:At.25524UniGene:At.71798UniProt:Q8H1E4
Coordinates (TAIR10) chr1:+:29364790..29365794
Molecular Weight (calculated) 36611.70 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.55
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAMNLYTC SRSFQDSGGE LMDALVPFIK SVSDSPSSSS AASASAFLHP SAFSLPPLPG YYPDSTFLTQ PFSYGSDLQQ TGSLIGLNNL SSSQIHQIQS
101: QIHHPLPPTH HNNNNSFSNL LSPKPLLMKQ SGVAGSCFAY GSGVPSKPTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG
201: DFARLNFPNL RHNGSHIGGD FGEYKPLHSS VDAKLEAICK SMAETQKQDK STKSSKKREK KVSSPDLSEK VKAEENSVSI GGSPPVTEFE ESTAGSSPLS
301: DLTFADPEEP PQWNETFSLE KYPSYEIDWD SILA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)