suba logo
AT1G22190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 5992 Blast hits to 5760 proteins in 260 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5935; Viruses - 12; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioGrid:24063eggNOG:ENOG410JCKFeggNOG:ENOG41114DEEMBL:AC073942
EMBL:BT000907EMBL:CP002684EnsemblPlants:AT1G22190EnsemblPlants:AT1G22190.1
entrez:838824Gene3D:3.30.730.10GeneID:838824Genevisible:Q9LM15
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006970
GO:GO:0009409GO:GO:0009414GO:GO:0009873GO:GO:0043565
Gramene:AT1G22190.1hmmpanther:PTHR31657hmmpanther:PTHR31657:SF9HOGENOM:HOG000239817
InParanoid:Q9LM15IntAct:Q9LM15InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT1G22190MINT:MINT-7262777OMA:PPWNENAPaxDb:Q9LM15
Pfam:PF00847Pfam:Q9LM15Pfscan:PS51032PhylomeDB:Q9LM15
PIR:E86354PRIDE:Q9LM15PRINTS:PR00367PRO:PR:Q9LM15
PROSITE:PS51032ProteinModelPortal:Q9LM15Proteomes:UP000006548RefSeq:NP_173638.1
SMART:SM00380SMR:Q9LM15STRING:3702.AT1G22190.1SUPFAM:SSF54171
TAIR:AT1G22190UniGene:At.25524UniGene:At.26676UniGene:At.70046
UniProt:Q9LM15
Coordinates (TAIR10) chr1:+:7836245..7837030
Molecular Weight (calculated) 29138.80 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.65
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTSMDFYSN KTFQQSDPFG GELMEALLPF IKSPSNDSSA FAFSLPAPIS YGSDLHSFSH HLSPKPVSMK QTGTSAAKPT KLYRGVRQRH WGKWVAEIRL
101: PRNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPD LRHNDEYQPL QSSVDAKLEA ICQNLAETTQ KQVRSTKKSS SRKRSSTVAV KLPEEDYSSA
201: GSSPLLTESY GSGGSSSPLS ELTFGDTEEE IQPPWNENAL EKYPSYEIDW DSILQCSSLV N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)