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AT4G30440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-D-glucuronate 4-epimerase 1
Curator
Summary (TAIR10)
UDP-D-glucuronate 4-epimerase
Computational
Description (TAIR10)
UDP-D-glucuronate 4-epimerase 1 (GAE1); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43669 Blast hits to 43658 proteins in 3000 species: Archae - 796; Bacteria - 26151; Metazoa - 773; Fungi - 435; Plants - 1177; Viruses - 35; Other Eukaryotes - 14302 (source: NCBI BLink).
Protein Annotations
BRENDA:5.1.3.6EC:5.1.3.6eggNOG:COG0451eggNOG:ENOG410IU3F
EMBL:AL161577EMBL:AY056303EMBL:AY085505EMBL:AY099855
EMBL:AY661562EMBL:BT000308EMBL:CP002687EnsemblPlants:AT4G30440
EnsemblPlants:AT4G30440.1entrez:829167ExpressionAtlas:Q9M0B6Gene3D:3.40.50.720
GeneID:829167Genevisible:Q9M0B6GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0016021GO:GO:0032580GO:GO:0033481
GO:GO:0050378GO:GO:0050829GO:GO:0050832Gramene:AT4G30440.1
gramene_pathway:5.1.3.6gramene_pathway:PWY-4861gramene_plant_reactome:1119620gramene_plant_reactome:6875728
hmmpanther:PTHR10366hmmpanther:PTHR10366:SF422HOGENOM:HOG000168000InParanoid:Q9M0B6
InterPro:IPR008089InterPro:IPR016040iPTMnet:Q9M0B6KEGG:ath:AT4G30440
KO:K08679OMA:QVRNSAQPaxDb:Q9M0B6Pfam:PF16363
Pfam:Q9M0B6PhylomeDB:Q9M0B6PIR:A85356PRIDE:Q9M0B6
PRINTS:PR01713PRO:PR:Q9M0B6ProteinModelPortal:Q9M0B6Proteomes:UP000006548
RefSeq:NP_194773.1SABIO-RK:Q9M0B6SMR:Q9M0B6STRING:3702.AT4G30440.1
SUPFAM:SSF51735SwissPalm:Q9M0B6TAIR:AT4G30440tair10-symbols:GAE1
TMHMM:TMhelixUniGene:At.20969UniGene:At.67043UniProt:I1VCA9
UniProt:Q9M0B6
Coordinates (TAIR10) chr4:-:14881976..14883265
Molecular Weight (calculated) 47460.70 Da
IEP (calculated) 10.03
GRAVY (calculated) -0.18
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSIEDELFP STPGKFKIDR SNRQLHRCFA STSTMFLWAL FLIALTASYL SFQSFVDSGS RYLTASWGGI QWEKQVRTSA QIHRSGGISV LVTGATGFVG
101: SHVSLALRKR GDGVVGLDNF NNYYDPSLKR ARRSLLSSRG IFVVEGDLND AKLLAKLFDV VAFTHVMHLA AQAGVRYALE NPQSYVHSNI AGLVNLLEIC
201: KAANPQPAIV WASSSSVYGL NEKVPFSESD RTDQPASLYA ATKKAGEEIT HTYNHIYGLA ITGLRFFTVY GPWGRPDMAY FSFTRNILQG KPITIYRGKN
301: RVDLARDFTY IDDIVKGCLG SLDSSGKSTG SGGKKRGAAP YRIFNLGNTS PVTVPILVDI LEKHLKVKAK RNFVEMPGNG DVPFTHANIS SARNEFGYKP
401: TTDLETGLKK FVRWYLSYYG YNTKAKLVH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)