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AT3G50060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 77
Curator
Summary (TAIR10)
Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes.
Computational
Description (TAIR10)
myb domain protein 77 (MYB77); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein r1 (TAIR:AT5G67300.1); Has 8885 Blast hits to 7887 proteins in 483 species: Archae - 0; Bacteria - 2; Metazoa - 822; Fungi - 555; Plants - 5415; Viruses - 3; Other Eukaryotes - 2088 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF424588EMBL:AL132978
EMBL:AY124828EMBL:AY519598EMBL:CP002686EnsemblPlants:AT3G50060
EnsemblPlants:AT3G50060.1entrez:824168Gene3D:1.10.10.60GeneID:824168
GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0009723
GO:GO:0009751GO:GO:0010200GO:GO:0048527Gramene:AT3G50060.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF483InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT3G50060KO:K09422OMA:EDEAIIM
Pfam:PF00249Pfscan:PS51294PIR:T45859PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_190575.1SMART:SM00717STRING:3702.AT3G50060.1
SUPFAM:SSF46689TAIR:AT3G50060tair10-symbols:MYB77UniGene:At.22600
UniProt:Q9SN12
Coordinates (TAIR10) chr3:-:18558146..18559051
Molecular Weight (calculated) 33112.90 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.67
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)