AT3G16120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Dynein light chain type 1 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.2); Has 1266 Blast hits to 1264 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 664; Fungi - 103; Plants - 251; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5465035..5465395 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 10495.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.78 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||
| Length | 93 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MLEGKAKVEE TDMPVKMQMQ AMKIASQSLD LFDVFDSISI AAHIKKEFDE RYGSGWQCVV GTNFGCFFTH SKGTFIYFHL GTLNFLIFKG ATL | ||||||||||||||||||||||||||||||||||||
| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)