AT4G14990.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Topoisomerase II-associated protein PAT1 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Topoisomerase II-associated protein PAT1; BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:8566259..8569511 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 86519.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.21 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||
| Length | 787 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERSDSRDFY NFAKTSSDNN SALFDASQYE FFGQSLEEVE LGGLDDDGTV RGHVDDEEYH LFDKREGAGL GSLSDMDDLA TTFAKLNRNV TGPKHLGVIG 101: DRGSGSFSRE SSTATDWTQD NEFTSWLDQH TVEEQVQEAS WSSQPQSSPN SNSLYRTSSY PQQQTQLQHY SSEPIIVPES TFTSFPSPGK RSQQSSPSHI 201: HRAPSLPGGS QSNFSAPNAS PLSNSTFHLS GLSHGPSHYG NNLARYASCG PTLGNMVQQP PHWVTDPGLL HGDHSALLHS LMQQQHLQQL PPRNGFTSQQ 301: LISLQQRQSL AHLAALQSQL YSSYPSPSHK ALFGVGEVRE HKHKSSHRSR KNRGGISQQT SDLASQKSES GLQFRSKYMT SEEIESILKM QHSNSHSSDP 401: YVNDYYHQAR LAKKSSGSRT KPQLYPSHLK DHQSRSRNSS DQQPQVHVDA LGKITLPSIC RPRALLEVDS PPSSGHKHLE DEPLVAARVT IEDAFGVLID 501: IVDIDRTLQF NRPQDGGAQL RRKRQILLEG LATSLQLVDP FSKTGQKTGL TTKDDIVFLR ITTLPKGRKL LTKYLQLLVP GTEIARVVCM AVFRHLRFLF 601: GGLPSDSLAA ETIANLAKAV TVCVQAMDLR ALSACLAAVV CSSEQPPLRP IGSSSGDGAS VVLVSLLERA AEVIVAVVPP RVSNHGNPND GLWRASFDEF 701: FSLLTKYCRS KYETIHGQNH DNAADVLELA IKREMPAELL RASLRHTNED QRNFLLNVGR SASPVSESTT TRASASGGQI NSEFVRG |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)