AT2G18750.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Calmodulin-binding protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT5G57580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:8125827..8128363 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 70203.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.29 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 622 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MQTRYMERTN SMREKRKLEE DDNQQQQQQP ERKRPALASV IVEALKMDSL QRLCSSLEPI LRRVVSEEVE RALAKLGPAR LSERSSPKRI EGIGGRNLQL 101: QFRSRLSVPL FTGGKIEGEQ GAAIHVVLLD MTTGHVLTVG PEASAKLDVV VLDGDFNTED DDGWSGEEFE GHLVKERQGK RPLLTGDVQV TLKEGVGTLG 201: ELIFTDNSSW IRCRKFRLGL RVSSGYCEGM RVREAKTEAF TVKDHRGELY KKHYPPALDD EVWRLEKIGK DGAFHKKLNK AGIYNVKEFL RLMVKDSQKL 301: RTILGSGMSN RMWETLAEHS KTCVLSEMLY VYYPEDSVGV VFNNIYEFSG LISGKQYYPA DSLSDNQKGY VDGLVRKAYE NWEQVIEYDS KSLMNFNQVS 401: KTDDIDYSMP VSVPSQPSTS YSDVTVEAYN QSPASSFPGQ SQLADTTYMH FGNSSFAPQD QLVNNTHESQ SMINSNGGVR LALGPATGSQ NQEQLVHPPP 501: EINSYNDWSN TCNRGVDGFL SEEEIRARSN EMLENDDMQQ LLRLFSMNGG DQQTPLNMGE DSFGFHSFGQ TSMADYEEDR SNSGKAVVGW LKIKAAMRWG 601: FFIRRKAAQR RAQIVQLDED DE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)