AT4G24290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MAC/Perforin domain-containing protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MAC/Perforin domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864), Membrane attack complex component/perforin (MACPF) domain, metazoa (InterPro:IPR020865); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT1G28380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12594856..12596590 | ||||||||
| Molecular Weight (calculated) | 39335.60 Da | ||||||||
| IEP (calculated) | 8.64 | ||||||||
| GRAVY (calculated) | -0.14 | ||||||||
| Length | 350 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MALRLPASKA AEVAIGSIGC GYDLAIDLRL KYCKGGSKDS RLLDIKEGDD NCEIVLPGGI SIPNVSKSIK CDKGERMRFR SDILPFQQMA EQFNQELSLA 101: GKIPSGLFNA MFEFSSCWQK DAAYTKNLAF DGVFISLYSV ALDKSQVLLR EHVKQAVPST WDPAALARFI DIYGTHIIVS VKMGGKDVIY AKQQHSSKLQ 201: PEDLQKRLKE VADKRFVEAS VVHNTGSERV QASSKVETKE QRLRFADTSS LGSYANKEDY VFMCKRRGGN DNRNLMHNEW LQTVQMEPDV ISMSFIPITS 301: LLNGVPGSGF LSHAINLYLR CKPINHLRFV HFFLELFFIL VVSFTFRLEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)