AT1G65540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LETM1-like protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LETM1-like protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT3G59820.1); Has 7253 Blast hits to 6279 proteins in 764 species: Archae - 76; Bacteria - 1084; Metazoa - 3311; Fungi - 589; Plants - 471; Viruses - 24; Other Eukaryotes - 1698 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24362382..24366011 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83565.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 736 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRALLRRR SYDVVKSLSE HLPTVQCFSS IERQGQRGYR DFKDVKKKES SVLMEGFYRS RLLQSPSFSN GVGILELPYP LGYRLVFQSM YSSLATANKP 101: DHDKKGEKVT SQTKEASPEE CDEAVEGLSL AKAKAKAMKL EESQKSDISI MQRVRLFLLG IGPALRAIAS MSREDWAKKL RHWKDEFKST LQHYWLGTKL 201: LWADVRISVR LLVKLANGKG LSRRERQQLT RTTADIFRLV PVAVFIIVPF MEFLLPVFLK LFPNMLPSTF QDKMKEEEAL KRRLNARMEY AKFLQDTVKE 301: MAKEVQTSRS GEIKKTAEDL DGFMTKVRRG VGVSNDEILG FAKLFNDELT LDNINRSRLV NMCKYMGISP FGTDAYLRYM LRKRLQEIKK DDKLIKAEGV 401: ESLSEAELRQ ACRERGMLQL GSVEEMREQL VDWLDLSLNH SVPSSLLILS RSFSMAGKLK PEEAVQATLS SLPDEVVDTV GVTALSSEDS VSERKRKLEY 501: LEMQEELIKE EEEEEEEEMA KMKESASSQK DVALDEMMAS TAKDANEQAK AKTLEKHEQL CELSRALAVL ASASSVSMER EEFLKLVKKE VDLYNSMVEK 601: GGTDDEEDAR KAYLAAREDS DRSAQKAIAD KTSSALLDRV ETMLQKLEKE IDDVDNKIGN RWRLLDRDYD GKVSPDEVAL AAMYLKDTLG KEGIQELIQN 701: LSKDKDGKIL VEDLVKLASE IEDAEAEETD EPTTKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)