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AT5G21010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BTB-POZ and MATH domain 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB-POZ and MATH domain 5 (BPM5); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 6 (TAIR:AT3G43700.1); Has 6893 Blast hits to 6668 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4820; Fungi - 220; Plants - 1514; Viruses - 55; Other Eukaryotes - 284 (source: NCBI BLink).
Protein Annotations
BioGrid:17500eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AC069325
EMBL:AF296834EMBL:AY042879EMBL:AY084611EMBL:BT025978
EMBL:CP002688EnsemblPlants:AT5G21010EnsemblPlants:AT5G21010.1entrez:832225
Gene3D:2.60.210.10GeneID:832225Genevisible:Q1EBV6GO:GO:0005634
GO:GO:0005829GO:GO:0006970GO:GO:0016567GO:GO:0042631
GO:GO:0071472Gramene:AT5G21010.1hmmpanther:PTHR24411hmmpanther:PTHR24411:SF35
HOGENOM:HOG000220921InParanoid:Q1EBV6IntAct:Q1EBV6InterPro:IPR000210
InterPro:IPR002083InterPro:IPR008974InterPro:IPR011333iPTMnet:Q1EBV6
KEGG:ath:AT5G21010KO:K10523MINT:MINT-7262979OMA:QWGIFFY
PaxDb:Q1EBV6Pfam:PF00651Pfam:Q1EBV6Pfscan:PS50097
Pfscan:PS50144PhylomeDB:Q1EBV6PRIDE:Q1EBV6PRO:PR:Q1EBV6
PROSITE:PS50097PROSITE:PS50144ProteinModelPortal:Q1EBV6Proteomes:UP000006548
Reactome:R-ATH-5632684RefSeq:NP_197600.1SMART:SM00061SMART:SM00225
SMR:Q1EBV6STRING:3702.AT5G21010.1SUPFAM:SSF49599SUPFAM:SSF54695
TAIR:AT5G21010tair10-symbols:ATBPM5tair10-symbols:BPM5UniGene:At.26159
UniPathway:UPA00143UniProt:Q1EBV6
Coordinates (TAIR10) chr5:+:7136062..7138374
Molecular Weight (calculated) 45193.70 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.18
Length 410 amino acids
Sequence (TAIR10)
(BLAST)
001: MSESVIQGSN PDRVLSPTSS KSVTQTVNGS HQFVIQGYSL AKGMGIGKHI ASDNFSVGGY QWGIFFYPDG KNPEDNSSYV SVFIALASEG TEVRALFELA
101: LVDQSGKGKH KVHSHFERSL DGGPYTLKYR GSMWGYKRFF RRSILETSDY LKDDCLIINC TVGVVVSEIL CPQLHSVHVP DSELGSHFGV LLDSMEGSDI
201: TFNIAGEKFL AHKLVLAARS PFFKSKFFSE FEANNTEVTI NDLEPKVFKA LLQFMYKDSL PEDVEPATAH TFERLKLSEI YETLIVKVLA AADKYDLIRL
301: RLLCESHICK GVSVKSVAKI LALADRYNAK ELKGVCLKFT AENLAAVLET DAYQQMKDEC VTLQSELLKA VAGHEEGSNS TGGAKSQSVW AQLSDGGGDT
401: TSRHVRQRTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)