AT5G57580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calmodulin-binding protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 341 Blast hits to 322 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23314994..23317683 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72368.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||
| Length | 647 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMDSGNNNMN RAKRNLDGND DDQPERKRPA FASVIVEALK VDSLQKLCSS LEPILRRVVS EELERALAKL GPARLTGSSG SSPKRIEGPD GRKLQLHFKS 101: RLSLPLFTGG KVEGEQGAVI HVVLIDANTG RAVVYGPEAS AKLHIVVLEG DFNTEDDEDW TQEEFESHVV KERSGKRPLL TGEVYVTLKE GVGTLGELVF 201: TDNSSWIRSR KFRLGLRVVS GCCDGMRIRE AKTEAFVVKD HRGELYKKHY PPALNDDVWR LDKIGKDGAF HKKLTAEGIN TVEDFLRVMV KDSPKLRTIL 301: GSGMSNKMWD ALVEHAKTCV QSSKLYIYYA EDSRNVGVVF NNIYELSGLI SGDQYFSADS LTDSQKVYVE GLVKKAYENW NLVIEYDGKS LLDLKQPQRL 401: SITHTNLENY STAAIDHPMQ MVAGHSSSMP PNQSPVLSDF AIGGYDQTLA TRYHSHPQLL NSNPRAQFEV ASCSTSQDQF MGNLHQTQST INNQHMNGLA 501: LGPSQSSTSG YQNINPSSVH QADLNHLEDW SNPRERGPDD FFSEEEIRLR SHEMLESEDM QQFLRLFSMG GGGNGSATHL PEDGYTFPSF LHTPMQGYDE 601: DRGRSGRAVV GWLKIKAAMR WGFFIRRKAA ERRAQIVELD DDDEDGE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)