AT1G01440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3133) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3133); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT4G01090.1); Has 702 Blast hits to 662 proteins in 107 species: Archae - 0; Bacteria - 15; Metazoa - 235; Fungi - 59; Plants - 328; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:159935..162219 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 74074.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRTSGDVYGA DTGSSRSDED RGFKEDLNES ATSPMRNRLD DSNSRPGSQR FVKSSRKEEE TDSDSSSSKN TTTRNNPIQY TDKQQAELLR KLDSIKDHLL 101: RGGGNNATVV DQPPMGFHAH HGPPPSYYNP YPEPFPYGMY PTASNQPHVP AYRDPYGFPV HRIPQNFYQG PSHYPNQMPP RPPYPQGQYV DIGSDILESQ 201: LQDPRFFPGT PSRYGDVPFS PALHHGEKVG PFSPHGGVHT RWPSEIDSEM GGAFARGYVQ QAVSDTDSRR CHPLAGGAPF IACHSCFELL YVPKKKLLGQ 301: ERQQKMQCGA CSEVITFRVV DKKLVFSSSA LGETTNRVSV EVEDRSSPIP VVDDYPLNDE EPRIHQETKI VHAVSPSDHS NDEDRSSISS EPRKQVVKSV 401: RSRAQGAKVP PPPPPEKSNL LELFEYSNVN RAAITYGMAQ LGYYKQESYT KQDSLKSESV ATETDVSYNE YYTNTEESED SRISKASKEG RRPRNRKQSS 501: EHSFAEVTNN ISSNDQNNEQ LEVWVNGYLI PEDLVISAEK QAGPVQAGKY WYDYRAGFWG VMGNPCLGII PPFIEEFSRP MPDNCGAGNT SVFVNGRELH 601: ERDLELLSSR GLPRGKNRSY IIDIAGRVLD GDSGEELKSL GRLAPTVDKV KHGFGMRVPR SLVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)