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AT1G67090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30309965 (2018): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24748391 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:19288221 (2010): plastid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
  • PMID:11826309 (2002): plastid
  • PMID:11719511 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ribulose bisphosphate carboxylase small chain 1A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribulose bisphosphate carboxylase small chain 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light; LOCATED IN: in 10 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1998 Blast hits to 1975 proteins in 459 species: Archae - 0; Bacteria - 424; Metazoa - 0; Fungi - 0; Plants - 969; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1261-MONOMERBioCyc:MetaCyc:AT1G67090-MONOMERBioGrid:28250EC:4.1.1.39
eggNOG:COG4451eggNOG:ENOG410IM2HEMBL:AC004146EMBL:AC007152
EMBL:AF325004EMBL:AF325011EMBL:AF372874EMBL:AF410291
EMBL:AY054188EMBL:AY054581EMBL:AY058831EMBL:AY059940
EMBL:AY062612EMBL:AY062711EMBL:AY065101EMBL:AY093380
EMBL:AY093388EMBL:AY097366EMBL:BT000362EMBL:BT002076
EMBL:CP002684EMBL:X13611EMBL:X68342EnsemblPlants:AT1G67090
EnsemblPlants:AT1G67090.1entrez:843029ExpressionAtlas:P10795Gene3D:3.30.190.10
GeneID:843029Genevisible:P10795GO:GO:0004497GO:GO:0005507
GO:GO:0009409GO:GO:0009507GO:GO:0009535GO:GO:0009570
GO:GO:0009579GO:GO:0009637GO:GO:0009853GO:GO:0009941
GO:GO:0010114GO:GO:0010218GO:GO:0015979GO:GO:0016020
GO:GO:0016984GO:GO:0019253GO:GO:0022626GO:GO:0031969
GO:GO:0031977GO:GO:0048046GO:GO:0080158gramene_plant_reactome:1119519
gramene_plant_reactome:6877215hmmpanther:PTHR31262hmmpanther:PTHR31262:SF4HOGENOM:HOG000141332
InParanoid:P10795IntAct:P10795InterPro:IPR000894InterPro:IPR024680
InterPro:IPR024681iPTMnet:P10795KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39
KEGG:ath:AT1G67090KO:K01602MINT:MINT-2584041OMA:YREHGNS
PaxDb:P10795Pfam:P10795Pfam:PF00101Pfam:PF12338
PhylomeDB:P10795PIR:G96694PIR:S03720PRIDE:P10795
PRINTS:PR00152PRO:PR:P10795ProteinModelPortal:P10795Proteomes:UP000006548
RefSeq:NP_176880.1SMART:SM00961SMR:P10795STRING:3702.AT1G67090.1
SUPFAM:SSF55239TAIR:AT1G67090tair10-symbols:RBCS1AUniGene:At.12721
UniGene:At.30194UniGene:At.37531UniGene:At.46639UniGene:At.49098
UniGene:At.67454UniGene:At.68122UniGene:At.70032UniGene:At.70053
UniProt:P10795UniProt:Q0WVH4World-2DPAGE:0003:P10795
Coordinates (TAIR10) chr1:-:25048465..25049249
Molecular Weight (calculated) 20217.20 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.27
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)