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AT2G23140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein with ARM repeat domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1); Has 11466 Blast hits to 5570 proteins in 449 species: Archae - 8; Bacteria - 346; Metazoa - 2626; Fungi - 852; Plants - 4850; Viruses - 10; Other Eukaryotes - 2774 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITMFeggNOG:ENOG410XU9YEMBL:CP002685EnsemblPlants:AT2G23140
EnsemblPlants:AT2G23140.1entrez:816846ExpressionAtlas:F4ILG6Gene3D:1.25.10.10
Gene3D:3.30.40.10GeneID:816846GO:GO:0005737GO:GO:0016567
GO:GO:0034614GO:GO:0048658GO:GO:0061630GO:GO:1904821
GO:GO:1904822Gramene:AT2G23140.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF117
InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
InterPro:IPR016024ncoils:CoilOMA:TGRACTCPaxDb:F4ILG6
Pfam:PF00514Pfam:PF04564Pfscan:PS50176Pfscan:PS51698
PRIDE:F4ILG6PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:F4ILG6
Proteomes:UP000006548RefSeq:NP_179895.6SMART:SM00185SMART:SM00504
SMR:F4ILG6SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT2G23140
UniGene:At.39339UniProt:F4ILG6
Coordinates (TAIR10) chr2:-:9845696..9849105
Molecular Weight (calculated) 90350.60 Da
IEP (calculated) 5.28
GRAVY (calculated) -0.34
Length 829 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)