AT4G11860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF544) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G22960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7134237..7138361 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74431.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.09 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||
| Length | 682 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATASSSESP SEETQTNQEA MQQQDLPKET TTEEEILYKT KSIQFLGRTT PIILQNENGP CPLLAICNVL LLRNNLNLNP DCYEVSQERL MSLVVDRLID 101: SNSKVNNKDE GYIENQQQNI ADAIDLLPRL TTGIDVNIKF RRIDDFEFTP ECAIFDLLDI PLYHGWIVDP QDVEAANAIG SKSYNALMGE LVALETQNVE 201: AQGDQNPGED SVDFAAATTA VLGVPSPCLS KTRSFDDSPP AAAELRRMRK GDLEEETELL QALQLSQGQG NDPTPNTNGD STNQDSAFTF SDASPTSTHI 301: TNISQLDQFK TDDDKASEND GNMIKVGKFP TTITTKSEDL NHDQLSSKQS GGETACDVEN VSSSKEAIVD VTSSEALSVD KGNLESAKSE SSSESVLKSD 401: AASIDPDLSC RSQHDDAPNA FIPPVSTDEP MYEGEECVNT VPPVCADKEP VYEGESLLGK RVEKDVGDCS SEGRATDGLT AEEGELIRNF MKNSASQLTF 501: CGLFRLQEGL KERELCVFFR NNHFCTMFKY EGELYLLATD QGYLNQPDLV WEKLNEVNGD TAFMTATFKD FTIDSSTGGA SGTWDERNAV TNTADYLASI 601: NNVADAGIDV NSDLQLAIAL QQQEFEDQSP RSNPTPQPTS VAASRLVTGP QVPRSSHRPS SAASSRHDGK SPKDKDSKCR IM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)