AT4G30660.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.478 vacuole 0.319 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Low temperature and salt responsive protein family | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT2G24040.1); Has 1253 Blast hits to 1253 proteins in 413 species: Archae - 0; Bacteria - 522; Metazoa - 40; Fungi - 292; Plants - 377; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:14955470..14955944 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 8519.75 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.87 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.89 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 74 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
1: MPSNCEILCE IIIAILLPPL GVCFRKGCCT VEFLICLVLT ILGYVPGIIY AIYVIVFQHR EEYFDEYRRP IYSA | ||||||||||||||||||||||||||||||||||||||||||||
See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)