suba logo
AT5G35460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.879
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZJFKeggNOG:KOG2895EMBL:AB015477EMBL:AY037213
EMBL:BT003018EMBL:CP002688EnsemblPlants:AT5G35460EnsemblPlants:AT5G35460.1
entrez:833509GeneID:833509GO:GO:0016021Gramene:AT5G35460.1
hmmpanther:PTHR31201hmmpanther:PTHR31201:SF1HOGENOM:HOG000238001InterPro:IPR021261
KEGG:ath:AT5G35460OMA:TIRWWDPPfam:PF10998PhylomeDB:Q9FJB4
Proteomes:UP000006548RefSeq:NP_198396.1STRING:3702.AT5G35460.1TAIR:AT5G35460
TMHMM:TMhelixUniGene:At.48899UniGene:At.6877UniProt:Q9FJB4
Coordinates (TAIR10) chr5:+:13672598..13674546
Molecular Weight (calculated) 44698.90 Da
IEP (calculated) 9.77
GRAVY (calculated) 0.10
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MANNEDSNSN GLDSFDAVKQ RFKDRSKKVV QTRELLSKQA VQTREILSKQ AVKIAKQAEE HERFINKVTH LVGVLGFGGF CFLLGARPQD IPLVYCFFYV
101: IFVPLRWIYY RFKKWHYYLL DFCYYANTIF LVDLLLYPKN EKLFMVCFSF AEGPLAWAII VWRCSLVFSS PDKIVSVLIH LLPGLVFFTI RWWNPATFAA
201: MHPVGTDRRV SWPYVEDKAY LFTWLFLVPL VVYTLWQVLY FLIVNVLRRQ RLLRDPEVMT SYRELSKKAE KANNKLWQLS GLLGDQNRIW MYILFQAIFT
301: VATMALTVPI FLSYRLHVIF QILKISAAVW NGGSFLLEVM PRQVIQKEKK KKAEMQPIEE QILHHEAVSH PTENEPKSTE T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)