AT3G50190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.918 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF247) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF247); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50140.1); Has 1131 Blast hits to 1013 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1129; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18609164..18611169 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 58429.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.19 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||
| Length | 493 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVPSKRRSP PPPPPPPQLP FGPKLPFPHI IIRRKARRNY QLRPMLTWYF LTFMMRQKLQ TRNQQPEETR EEWVIWIKDK MEQVMRDAAT TSWDKLCIYR 101: VPLSFQKSDK NSYFPHTVSL GPYHHGDEHL RPMDYHKWRA VNMVMKRTKQ GIEMYIDAMK ELEERARACY EGPIGLSSNK FTQMLVLDGC FVLDLFRGAY 201: EGFSKLGYDR NDPVFAMRGS MHSIRRDMLM LENQLPLMPT YMPSTKIENS QENNNKFFHP IADKDKEELH CLDVFRRSVL QPSLKPEPRL SRRWSWKPVV 301: ADKRQQKLLH CVTELREAGI KFKRRKSDRL WDIQFKNGCL EIPKLLIHDG TKSLLSNLIA FEQCHIDSTK QITSYIIFVE NLINSNEDVR YLQYCGIIEH 401: WLESDSEVVD LFHKLCQDVV FDPIDSYLYP LCLGVDRFYS RKWSLFSAVI LHKYQLNLRS PWAYFSFFGA VILLLLTFCE SFFTVYAYFE PNT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)