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AT2G43420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.734
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-beta hydroxysteroid dehydrogenase/isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
3-beta hydroxysteroid dehydrogenase/isomerase family protein; FUNCTIONS IN: binding, 3-beta-hydroxy-delta5-steroid dehydrogenase activity, catalytic activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (TAIR:AT2G26260.1); Has 10307 Blast hits to 10296 proteins in 2122 species: Archae - 301; Bacteria - 6803; Metazoa - 545; Fungi - 280; Plants - 752; Viruses - 81; Other Eukaryotes - 1545 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G43420-MONOMERBioGrid:4279EC:1.1.1.170eggNOG:COG0451
eggNOG:KOG1430EMBL:AC002335EMBL:AK117930EMBL:AY045841
EMBL:CP002685EMBL:DQ415280EnsemblPlants:AT2G43420EnsemblPlants:AT2G43420.1
entrez:818943Gene3D:3.40.50.720GeneID:818943Genevisible:A9X4U2
GO:GO:0003854GO:GO:0005789GO:GO:0005886GO:GO:0009506
GO:GO:0016021GO:GO:0016126GO:GO:0047012Gramene:AT2G43420.1
gramene_pathway:1.1.1.170gramene_pathway:PWY66-341hmmpanther:PTHR10366hmmpanther:PTHR10366:SF386
HOGENOM:HOG000167989InParanoid:A9X4U2InterPro:IPR002225InterPro:IPR003388
InterPro:IPR016040KEGG:ath:AT2G43420KO:K07748OMA:HAHICAA
PaxDb:A9X4U2Pfam:A9X4U2Pfam:PF01073Pfam:PF02453
Pfscan:PS50845PhylomeDB:A9X4U2PIR:H84865PRIDE:A9X4U2
PRO:PR:A9X4U2PROSITE:PS50845ProteinModelPortal:A9X4U2Proteomes:UP000006548
Reactome:R-ATH-191273RefSeq:NP_565998.1SMR:A9X4U2STRING:3702.AT2G43420.1
SUPFAM:SSF51735TAIR:AT2G43420TMHMM:TMhelixUniGene:At.12188
UniGene:At.59216UniPathway:UPA00770UniProt:A9X4U2
Coordinates (TAIR10) chr2:-:18031493..18034936
Molecular Weight (calculated) 63036.80 Da
IEP (calculated) 7.77
GRAVY (calculated) 0.12
Length 561 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEDSVHGDS HLKTCVVLGG RGFIGRSLVS RLLRLGNWTV RVADSGHTLH LDESDSLLED ALSSGRASYH CVDVRDKPQI VKVTEGSYVV FYMGATDLRS
101: HDYFDCYKVI VQGTRNVISA CRESGVRKLI YNSTADVVFD GSQPIRDGDE SLRRPLKFQS MLTDFKAQAE ALIKLANNRD GLLTCALRSS IVFGPGDTEF
201: VPFLVNLAKS GYAKFILGSG ENISDFTYSE NVSHAHICAV KALDSQMEFV AGKEFFITNL KPVRFWDFVS HIVEGLGYPR PSIKLPVRLV LYVFSLLKWT
301: HEKEGLGSNY DTAHQYALLA SSTRTFNCNA AKKHLGYTPV VTLEDGIAST LQWFSRDLEK SDDTIIQSTA DQLLGCGKVA DILLWRNEKK TFVSFLVLNL
401: FYYWFFFSGN TFTSSAAQLL FIFAVALYGV SFVPSKIFGF QVNKIPPWRF EISESAVRDL SSDIVVVWNQ GVRSFKSLSS GGDWIKFFKI AGSLYLLKLI
501: VSRSLAAFLF TVMSFSFTGF FIYEQYELEL YHLARIFVEC LTFIKRMVIP VSDASSKPMF M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)