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AT3G13772.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transmembrane nine 7
Curator
Summary (TAIR10)
Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. Overexpression of this protein in yeast alters copper and zinc homeostasis.
Computational
Description (TAIR10)
transmembrane nine 7 (TMN7); INVOLVED IN: cellular copper ion homeostasis, cellular zinc ion homeostasis; LOCATED IN: integral to membrane, Golgi apparatus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT1G55130.1); Has 1568 Blast hits to 1544 proteins in 321 species: Archae - 0; Bacteria - 1; Metazoa - 615; Fungi - 232; Plants - 456; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPIWeggNOG:KOG1278EMBL:AK228926EMBL:AP001307
EMBL:CP002686EnsemblPlants:AT3G13772EnsemblPlants:AT3G13772.1entrez:820587
GeneID:820587Genevisible:Q9LIC2GO:GO:0000139GO:GO:0005634
GO:GO:0005737GO:GO:0005768GO:GO:0005774GO:GO:0005794
GO:GO:0005802GO:GO:0006811GO:GO:0006878GO:GO:0006882
GO:GO:0010008GO:GO:0016021Gramene:AT3G13772.1hmmpanther:PTHR10766
hmmpanther:PTHR10766:SF37HOGENOM:HOG000216679InParanoid:Q9LIC2InterPro:IPR004240
InterPro:IPR020846KEGG:ath:AT3G13772KO:K17086OMA:FRAPINS
PANTHER:PTHR10766PaxDb:Q9LIC2Pfam:PF02990Pfam:Q9LIC2
PhylomeDB:Q9LIC2PRIDE:Q9LIC2PRO:PR:Q9LIC2ProteinModelPortal:Q9LIC2
Proteomes:UP000006548RefSeq:NP_187991.1STRING:3702.AT3G13772.1SUPFAM:SSF103473
TAIR:AT3G13772tair10-symbols:AtTMN7tair10-symbols:TMN7TCDB:8.A.68.1.2
TMHMM:TMhelixUniGene:At.43032UniProt:Q9LIC2
Coordinates (TAIR10) chr3:-:4521712..4524394
Molecular Weight (calculated) 74237.50 Da
IEP (calculated) 8.66
GRAVY (calculated) 0.13
Length 641 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKTKGSSFR FYATLLLSFL SFSLSRAFYL PGVAPRDFQK GDPLYVKVNK LSSTKTQLPY DYYYLNYCKP PKILNNAENL GEVLRGDRIE NSVYTFQMLE
101: DQPCKVGCRV KLNADSTKNF KEKIDDEYRA NMILDNLPVA VLRQRRDGSQ STTYEHGFRV GFKGSYEGSK EEKYFIHNHL SFRVMYHRDQ ESDSARIVGF
201: EVTPNSILHE YKEWDEKNPQ LTTCNKDTKN LIQGNTVPQE VEQGKEIVFT YDVSFKESEI KWASRWDTYL LMNDDQIHWF SIINSLMIVL FLSGMVAMIM
301: MRTLYKDISN YNQLETQDEA QEETGWKLVH GDVFRPPVNS GLLCVYVGTG VQIFGMSLVT MMFALLGFLS PSNRGGLMTA MVLLWVFMGI FAGYSSSRLH
401: KMFKGNKWKR MTLKTAFMFP GILFAIFFVL NALIWGEQSS GAIPFGTMFA LFCLWFGISV PLVFVGSYLG YKKPAIEDPV KTNKIPRQVP EQPWYMKPVF
501: SILIGGILPF GAVFIELFFI LTSIWLNQFY YIFGFLFIVF LILIVTCAEI TVVLCYFQLC SEDYNWWWRA YLTAGSSAFY LFLYSIFYFF TKLEITKLVS
601: GMLYFGYMII ISYAFFVLTG TIGFYACFWF VRKIYSSVKI D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)