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AT2G44100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : guanosine nucleotide diphosphate dissociation inhibitor 1
Curator
Summary (TAIR10)
GDP dissociation inhibitor involved in vesicular membrane traffic
Computational
Description (TAIR10)
guanosine nucleotide diphosphate dissociation inhibitor 1 (GDI1); CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: RAB GDP dissociation inhibitor 2 (TAIR:AT3G59920.1); Has 1316 Blast hits to 1209 proteins in 256 species: Archae - 2; Bacteria - 0; Metazoa - 652; Fungi - 289; Plants - 183; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
Protein Annotations
BioGrid:4352eggNOG:COG5044eggNOG:KOG1439EMBL:AC004005
EMBL:AF361801EMBL:AK226690EMBL:AK227643EMBL:AK316933
EMBL:AY050418EMBL:AY065087EMBL:AY086920EMBL:AY113036
EMBL:CP002685EMBL:D83531EMBL:Y07961EnsemblPlants:AT2G44100
EnsemblPlants:AT2G44100.1EnsemblPlants:AT2G44100.2entrez:819016ExpressionAtlas:Q96254
Gene3D:3.50.50.60GeneID:819016Genevisible:Q96254GO:GO:0005093
GO:GO:0005096GO:GO:0005829GO:GO:0015031GO:GO:0016491
hmmpanther:PTHR11787hmmpanther:PTHR11787:SF10HOGENOM:HOG000163825IntAct:Q96254
InterPro:IPR000806InterPro:IPR018203InterPro:IPR023753KEGG:ath:AT2G44100
KO:K17255OMA:HQPAYDTPaxDb:Q96254Pfam:PF00996
Pfam:Q96254PhylomeDB:Q96254PIR:T00690PRIDE:Q96254
PRINTS:PR00891PRINTS:PR00892PRO:PR:Q96254ProteinModelPortal:Q96254
Proteomes:UP000006548Reactome:R-ATH-194840RefSeq:NP_001078054.1RefSeq:NP_181938.1
SMR:Q96254STRING:3702.AT2G44100.1SUPFAM:SSF51905TAIR:AT2G44100
tair10-symbols:AT-GDI1tair10-symbols:ATGDI1tair10-symbols:GDI1UniGene:At.21525
UniGene:At.23961UniProt:Q96254
Coordinates (TAIR10) chr2:+:18241804..18244864
Molecular Weight (calculated) 49821.60 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.31
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)