AT1G32790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CTC-interacting domain 11 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CTC-interacting domain 11 (CID11); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12 (TAIR:AT4G10610.1); Has 4154 Blast hits to 3448 proteins in 292 species: Archae - 0; Bacteria - 29; Metazoa - 2530; Fungi - 406; Plants - 814; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11875174..11877188 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38954.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.47 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 358 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVVETGAAA TAADAGGVVI QPPPSSPPSS MTSQDSGVSS DDQNHHSRID QVLRHDQGLY SKIGSHVARS DGVDGGESFK RDMRELQELF SKLNPMAEEF 101: VPPSLNKQGG NGVNGGFFTS AGSFFRNNGF AGTGNGGYGN ENGGFRRKKS FGQGKRRMNA RTSMAQREDV IRRTVYVSDL DQQVTEEQLA GLFVSCGQVV 201: DCRICGDPNS VLRFAFIEFT DEEGAMTALN LSGTMLGFYP VKVLPSKTAI APVNPTFLPR TEDEREMCAR TIYCTNIDKK VTQSDVKIFF ESFCGEVYRL 301: RLLGDYQHST RIAFVEFVMA ESAIAALNCS GVVLGSLPIR VSPSKTPVRP RSPRHPMH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)