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AT1G06110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.434
nucleus 0.211
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SKP1/ASK-interacting protein 16
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1/ASK-interacting protein 16 (SKIP16); CONTAINS InterPro DOMAIN/s: ApaG (InterPro:IPR007474); Has 2063 Blast hits to 2061 proteins in 779 species: Archae - 0; Bacteria - 1378; Metazoa - 194; Fungi - 63; Plants - 89; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22362eggNOG:COG2967eggNOG:KOG4408EMBL:AC024174
EMBL:AF419599EMBL:AY099571EMBL:BT002142EMBL:CP002684
EnsemblPlants:AT1G06110EnsemblPlants:AT1G06110.1entrez:837120Gene3D:2.60.40.1470
GeneID:837120Genevisible:Q9LND7GO:GO:0016567GO:GO:0019005
Gramene:AT1G06110.1hmmpanther:PTHR14289hmmpanther:PTHR14289:SF16HOGENOM:HOG000243753
InParanoid:Q9LND7IntAct:Q9LND7InterPro:IPR001810InterPro:IPR007474
InterPro:IPR018958KEGG:ath:AT1G06110KO:K10290OMA:DLGRYIQ
PaxDb:Q9LND7Pfam:PF04379Pfam:PF09346Pfam:Q9LND7
Pfscan:PS51087PhylomeDB:Q9LND7PIR:D86196PRIDE:Q9LND7
PRO:PR:Q9LND7PROSITE:PS51087ProteinModelPortal:Q9LND7Proteomes:UP000006548
RefSeq:NP_563759.1SMR:Q9LND7STRING:3702.AT1G06110.1SUPFAM:SSF110069
SUPFAM:SSF160631SUPFAM:SSF81383TAIR:AT1G06110tair10-symbols:SKIP16
UniGene:At.15468UniPathway:UPA00143UniProt:Q9LND7
Coordinates (TAIR10) chr1:-:1853237..1854938
Molecular Weight (calculated) 48978.60 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.15
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)