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AT4G10610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.567
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CTC-interacting domain 12
Curator
Summary (TAIR10)
RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif).
Computational
Description (TAIR10)
CTC-interacting domain 12 (CID12); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.1); Has 2841 Blast hits to 2335 proteins in 253 species: Archae - 0; Bacteria - 4; Metazoa - 1803; Fungi - 259; Plants - 569; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Protein Annotations
BioGrid:11952eggNOG:COG0724eggNOG:KOG0118EMBL:AF109721
EMBL:AF118222EMBL:AL049523EMBL:AL161517EMBL:AY039599
EMBL:AY078011EMBL:AY086286EMBL:CP002687EMBL:U44134
EnsemblPlants:AT4G10610EnsemblPlants:AT4G10610.1entrez:826653ExpressionAtlas:Q9S7N9
Gene3D:3.30.70.330GeneID:826653Genevisible:Q9S7N9GO:GO:0000166
GO:GO:0003723GO:GO:0005634hmmpanther:PTHR24012HOGENOM:HOG000006309
InParanoid:Q9S7N9InterPro:IPR000504InterPro:IPR009818InterPro:IPR012677
OMA:FIMAESAPaxDb:Q9S7N9Pfam:PF00076Pfam:PF07145
Pfam:PF14259Pfam:Q9S7N9Pfscan:PS50102PhylomeDB:Q9S7N9
PIR:T04196PRIDE:Q9S7N9PRO:PR:Q9S7N9PROSITE:PS50102
ProteinModelPortal:Q9S7N9Proteomes:UP000006548RefSeq:NP_192799.1SMART:SM00360
SMR:Q9S7N9STRING:3702.AT4G10610.1SUPFAM:SSF54928TAIR:AT4G10610
tair10-symbols:ATRBP37tair10-symbols:CID12tair10-symbols:RBP37UniGene:At.24082
UniProt:Q9S7N9
Coordinates (TAIR10) chr4:+:6557336..6559143
Molecular Weight (calculated) 36782.00 Da
IEP (calculated) 7.87
GRAVY (calculated) -0.21
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVIESVGAN TTVEAGGLIS PSPPSSVTSQ ESGASSNNDH GGNGIHDEIG VHVARSDGGE SFKRDMRELH ELLSKLNPMA KEFIPPSLTK PVVNGFNGGF
101: FAVNNGFVAA GNFPVNEDGS FRRKKSFGQQ GKRRMNPRTS LAQREEIIRR TVYVSDIDQQ VTEEQLAGLF IGFGQVVDCR ICGDPNSVLR FAFIEFTDEV
201: GARTALNLSG TMLGFYPVKV MPSKTAIAPV NPTFLPRTED EREMCARTIY CTNIDKKLTQ TDIKLFFESV CGEVYRLRLL GDYHHPTRIG FVEFVMAESA
301: IAALNCSGVL LGSLPIRVSP SKTPVRSRAI PRHQMH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)