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AT5G53470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 10363372
SwissProt : plasma membrane 16381842
SwissProt : extracellular 16381842
SwissProt : endoplasmic reticulum 16381842
TAIR : plasma membrane 10363372
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : acyl-CoA binding protein 1
Curator
Summary (TAIR10)
Encodes an acyl-CoA binding protein that is localized to vesicles,and plasma membrane especially in epidermal cells of heart, torpedo and cotyledon stage embryos, cell wall of the seed coat. Northern blot analysis showed that the 1.4 kb ACBP1 mRNA was expressed in silique, root, stem, leaf and flower.
Computational
Description (TAIR10)
acyl-CoA binding protein 1 (ACBP1); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 2 (TAIR:AT4G27780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20673DIP:DIP-52243NeggNOG:COG4281eggNOG:KOG0817
EMBL:AB020754EMBL:AY059881EMBL:AY087475EMBL:AY093383
EMBL:CP002688EMBL:U75273EMBL:U75274EnsemblPlants:AT5G53470
EnsemblPlants:AT5G53470.1entrez:835428Gene3D:1.20.80.10Gene3D:1.25.40.20
GeneID:835428Genevisible:Q9SM23GO:GO:0000062GO:GO:0005576
GO:GO:0005789GO:GO:0005886GO:GO:0006629GO:GO:0006869
GO:GO:0008289GO:GO:0009409GO:GO:0009505GO:GO:0009737
GO:GO:0010029GO:GO:0010162GO:GO:0010288GO:GO:0016021
GO:GO:0032791GO:GO:0070300GO:GO:1900140Gramene:AT5G53470.1
hmmpanther:PTHR24119hmmpanther:PTHR24119:SF0HOGENOM:HOG000241133InParanoid:Q9SM23
IntAct:Q9SM23InterPro:IPR000582InterPro:IPR002110InterPro:IPR014352
InterPro:IPR020683iPTMnet:Q9SM23KEGG:ath:AT5G53470OMA:KETHALT
PaxDb:Q9SM23Pfam:PF00887Pfam:PF13857Pfam:Q9SM23
Pfscan:PS50088Pfscan:PS50297Pfscan:PS51228PhylomeDB:Q9SM23
PRIDE:Q9SM23PRINTS:PR00689PRO:PR:Q9SM23PROSITE:PS50088
PROSITE:PS50297PROSITE:PS51228ProteinModelPortal:Q9SM23Proteomes:UP000006548
RefSeq:NP_200159.1SMART:SM00248SMR:Q9SM23STRING:3702.AT5G53470.1
SUPFAM:SSF47027SUPFAM:SSF48403TAIR:AT5G53470tair10-symbols:ACBP
tair10-symbols:ACBP1TMHMM:TMhelixUniGene:At.8952UniProt:Q9SM23
Coordinates (TAIR10) chr5:+:21710497..21712391
Molecular Weight (calculated) 37528.70 Da
IEP (calculated) 4.25
GRAVY (calculated) -0.47
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)