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AT1G23220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.506
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dynein light chain type 1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT5G20110.1); Has 1246 Blast hits to 1246 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 642; Fungi - 104; Plants - 252; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111NK2eggNOG:KOG3430EMBL:AC005292EMBL:AY063781
EMBL:AY096447EMBL:CP002684EnsemblPlants:AT1G23220EnsemblPlants:AT1G23220.1
entrez:838931Gene3D:3.30.740.10GeneID:838931GO:GO:0005875
GO:GO:0007017GO:GO:0031514Gramene:AT1G23220.1hmmpanther:PTHR11886
hmmpanther:PTHR11886:SF39HOGENOM:HOG000211144InterPro:IPR001372KEGG:ath:AT1G23220
KO:K10418OMA:AFKCARDPANTHER:PTHR11886Pfam:PF01221
PhylomeDB:Q9LR39Proteomes:UP000006548RefSeq:NP_173736.1SMART:SM01375
SMR:Q9LR39STRING:3702.AT1G23220.1SUPFAM:SSF54648TAIR:AT1G23220
UniGene:At.27167UniProt:Q9LR39
Coordinates (TAIR10) chr1:+:8242614..8244136
Molecular Weight (calculated) 14722.60 Da
IEP (calculated) 9.71
GRAVY (calculated) -0.57
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)