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AT4G37210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31463991 (2020): nucleus nuclear matrix
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110P5EeggNOG:KOG4563EMBL:AF370189EMBL:AY062946
EMBL:CP002687EnsemblPlants:AT4G37210EnsemblPlants:AT4G37210.1entrez:829875
ExpressionAtlas:Q94K88Gene3D:1.25.40.10GeneID:829875Gramene:AT4G37210.1
hmmpanther:PTHR15081hmmpanther:PTHR15081:SF1HOGENOM:HOG000077559InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT4G37210ncoils:Coil
OMA:ECINAYYPfam:PF13414Pfam:PF13424Pfscan:PS50005
Pfscan:PS50293PhylomeDB:Q94K88PROSITE:PS50005PROSITE:PS50293
Proteomes:UP000006548RefSeq:NP_568019.1SMART:SM00028SMR:Q94K88
STRING:3702.AT4G37210.1SUPFAM:SSF48452TAIR:AT4G37210UniGene:At.4659
UniProt:Q94K88
Coordinates (TAIR10) chr4:+:17512376..17514421
Molecular Weight (calculated) 52278.10 Da
IEP (calculated) 4.01
GRAVY (calculated) -0.49
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEESASASE ASVIQTLTEP ATEIAQTLEP NLASIEATVE SVVQGGTEST CNNDANNNNA ADSAATEVCD EEREKTLEFA EELTEKGSVF LKENDFAEAV
101: DCFSRALEIR VAHYGELDAE CINAYYRYGL ALLAKAQAEA DPLGNMPKKE GEVQQESSNG ESLAPSVVSG DPERQGSSSG QEGSGGKDQG EDGEDCQDDD
201: LSDADGDADE DESDLDMAWK MLDIARVITD KQSTETMEKV DILCSLAEVS LEREDIESSL SDYKNALSIL ERLVEPDSRR TAELNFRICI CLETGCQPKE
301: AIPYCQKALL ICKARMERLS NEIKGASGSA TSSTVSEIDE GIQQSSNVPY IDKSASDKEV EIGDLAGLAE DLEKKLEDLK QQAENPKQVL AELMGMVSAK
401: PNASDKVVPA AAEMSSSRMG TVNTNFGKDL ESPTVSTAHT GAAGGGAASG VTHLGVVGRG VKRVLMNTTS IESSASKKPA LEFSDKADGN SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)