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AT5G22480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.897
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ZPR1 zinc-finger domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ZPR1 zinc-finger domain protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, ZPR1-type (InterPro:IPR004457); BEST Arabidopsis thaliana protein match is: ZPR1 zinc-finger domain protein (TAIR:AT5G37340.3); Has 1143 Blast hits to 605 proteins in 280 species: Archae - 310; Bacteria - 0; Metazoa - 225; Fungi - 282; Plants - 53; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1779eggNOG:KOG2703EMBL:CP002688EnsemblPlants:AT5G22480
EnsemblPlants:AT5G22480.1entrez:832309GeneID:832309GO:GO:0005829
GO:GO:0008270Gramene:AT5G22480.1InParanoid:F4K9W6InterPro:IPR004457
iPTMnet:F4K9W6KEGG:ath:AT5G22480KO:K06874ncoils:Coil
OMA:FIMNDPAPaxDb:F4K9W6Pfam:PF03367PRIDE:F4K9W6
ProteinModelPortal:F4K9W6Proteomes:UP000006548RefSeq:NP_197640.1SMART:SM00709
SMR:F4K9W6STRING:3702.AT5G22480.1TAIR:AT5G22480TIGRfam:TIGR00310
TIGRFAMs:TIGR00310UniGene:At.31073UniProt:F4K9W6
Coordinates (TAIR10) chr5:-:7451643..7456168
Molecular Weight (calculated) 54079.50 Da
IEP (calculated) 4.34
GRAVY (calculated) -0.32
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNKNDQDID VRSVVEAVSA DLSFGAPLYV VESMCMRCQE NGTTRFLLTL IPHFRKVLIS AFECPHCGER NNEVQFAGEI QPRGCCYNLE VLAGDVKIFD
101: RQVVKSESAT IKIPELDFEI PPEAQRGSLS TVEGILARAA DELSALQEER KKVDPKTAEA IDQFLSKLRA CAKAETSFTF ILDDPAGNSF IENPHAPSPD
201: PSLTIKFYER TPEQQATLGY VANPSQAGQS EGSLGAPSTK TAYVPNGTIG ATAGHRAIAQ SNSTDISDNL FRYSAPEEVM TFPSTCGACT EPCETRMFVT
301: KIPYFQEVIV MASTCDSCGY RNSELKPGGA IPEKGKKITL SVRNITDLSR DVIKSDTAGV IIPELDLELA GGTLGGMVTT VEGLVTQIRE SLARVHGFTF
401: GDSMEESKLN KWREFGARLT KLLSFEQPWT LILDDELANS FIAPVTDDIK DDHQLTFEEY ERSWDQNEEL GLNDIDTSSA DAAYESTETT KLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)