AT3G60250.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : casein kinase II beta chain 3 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis | ||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
casein kinase II beta chain 3 (CKB3); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta subunit 4 (TAIR:AT2G44680.1); Has 1086 Blast hits to 1084 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 424; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:22270714..22271962 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 30800.00 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.82 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||
Length | 276 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MYKERSGGGG GGSSRSEILG GAIDRKRIND ALNKKLEKSS TSTTTSRVFS SKDKDPFSFT STKTQLPDVE SETDSEGSDV SGSEGDDTSW ISWFCNLRGN 101: DFFCEVDEDY IQDDFNLCGL SGQVPYYDYA LDLILDVDAS NSEMFTDEQH EMVESAAEML YGLIHVRYIL TTKGMAAMTE KYKNCDFGRC PRVFCCGQSC 201: LPVGQSDIPR SSTVKIYCPK CEDISYPRSK FQGNIDGAYF GTTFPHLFLM TYGNLKPQKP TQSYVPKIFG FKVHKP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)