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AT3G12760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.959
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTIJeggNOG:KOG3077EMBL:AB024033EMBL:AY150404
EMBL:CP002686EnsemblPlants:AT3G12760EnsemblPlants:AT3G12760.1entrez:820458
GeneID:820458Gramene:AT3G12760.1hmmpanther:PTHR12281InterPro:IPR005176
InterPro:IPR009060InterPro:IPR014764KEGG:ath:AT3G12760KO:K17822
OMA:SFHRESMPANTHER:PTHR12281Pfam:PF03556Pfam:PF14555
Pfscan:PS51229PhylomeDB:Q9LTV9PROSITE:PS51229Proteomes:UP000006548
RefSeq:NP_566436.1SMR:Q9LTV9STRING:3702.AT3G12760.1SUPFAM:SSF46934
TAIR:AT3G12760UniGene:At.5676UniProt:Q9LTV9
Coordinates (TAIR10) chr3:+:4054963..4056826
Molecular Weight (calculated) 29011.30 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.39
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MHKLSRSNRD KLQQFVAITG ASEKNALQAL KASDWHLEAA FDVFYSQPQP RSNAAEVRRL EELYNRYKDP YSDMILAEGI SVLCNDLEVE PQDIVTLVLS
101: WHMNAATACE FSRQEFISGL QALGVDSIGK LQEKLPFMRS ELKDEQKFHE IYNFAFGWAK EKGQKSLALD TAIGMWQLLF AEREWPLVTH WCDFLQDRHN
201: KAISKDTWAQ LLEFSRMVDP VLSNYDAEGA WPYLIDEFVE YLYDKNVVEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)