AT2G29020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rab5-interacting family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rab5-interacting family protein; CONTAINS InterPro DOMAIN/s: Rab5-interacting (InterPro:IPR010742); BEST Arabidopsis thaliana protein match is: Rab5-interacting family protein (TAIR:AT5G59410.1); Has 196 Blast hits to 196 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12469869..12471428 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 14808.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.34 | ||||||||||||||||||||||||||||||||
| Length | 133 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKEGKSSKSS SQQEQHEQIY HQNSHLGSFN FAKLFDSEAS WDKDQLGDVL HWIRQVVGLL CGLLWGAIPL VGGIWLLLFL AISSGIVYGY YALVLKIDEE 101: DFGGHAALLQ DGLFASLSLF LLAWILVYSL SSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)