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AT3G03330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : plasma membrane 17644812
TAIR : endoplasmic reticulum 16618929
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G03350.1); Has 112445 Blast hits to 112247 proteins in 3561 species: Archae - 906; Bacteria - 75731; Metazoa - 6658; Fungi - 6086; Plants - 2548; Viruses - 2; Other Eukaryotes - 20514 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G03330-MONOMEReggNOG:COG0300eggNOG:ENOG410IUBTEMBL:AY127020
EMBL:BT000550EMBL:CP002686EnsemblPlants:AT3G03330EnsemblPlants:AT3G03330.1
entrez:821281Gene3D:3.40.50.720GeneID:821281GO:GO:0005783
GO:GO:0005886GO:GO:0016491Gramene:AT3G03330.1hmmpanther:PTHR24322
hmmpanther:PTHR24322:SF631InterPro:IPR002347InterPro:IPR016040InterPro:IPR020904
KEGG:ath:AT3G03330OMA:YLVHNAAPANTHER:PTHR24322Pfam:PF00106
PhylomeDB:Q8L7U0PRINTS:PR00081PROSITE:PS00061Proteomes:UP000006548
RefSeq:NP_186983.2scanprosite:PS00061SMR:Q8L7U0STRING:3702.AT3G03330.1
SUPFAM:SSF51735TAIR:AT3G03330TMHMM:TMhelixUniGene:At.41001
UniGene:At.43920UniProt:Q8L7U0
Coordinates (TAIR10) chr3:-:783572..786148
Molecular Weight (calculated) 35790.50 Da
IEP (calculated) 9.79
GRAVY (calculated) 0.01
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTLLFFSLG ALLLIVLLFK FAFADGDFTL ISKKHVKREA IQGKVVWITG ASRGIGEILA KQFASLDAKL ILSARNKAEL DRVKSELKGK FAPEDVKVLP
101: LDLASGEESL KHVVEQAVSL FPGAGVDYLV HNAAFERPKS KASDASEETL KTTFDVNVFG TISLTKLVAP HMLKQGGGHF VVISSAAGKV PSPGQAIYSA
201: SKHALHGYFH SLRSEFCQKG IKVTVVCPGP IETWNGTGTS TSEDSKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP SLGFWLMDKV
301: GGKRVEVAEK KGNTYSWDLL FGKKTKTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)