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AT1G71990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : fucosyltransferase 13
Curator
Summary (TAIR10)
This gene encodes a Lewis-type alpha 1,4-fucosyltransferase
Computational
Description (TAIR10)
fucosyltransferase 13 (FUT13); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: Lewis a epitope biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 10 (InterPro:IPR001503), Alpha-(1, 3)-fucosyltransferase/alpha-(1, 4)-fucosyltransferase, plant (InterPro:IPR017177); BEST Arabidopsis thaliana protein match is: fucosyltransferase 11 (TAIR:AT3G19280.1); Has 1516 Blast hits to 1512 proteins in 188 species: Archae - 4; Bacteria - 145; Metazoa - 1010; Fungi - 0; Plants - 129; Viruses - 3; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
BioGrid:28750BRENDA:2.4.1.214CAZy:GT10EC:2.4.1.-
eggNOG:ENOG410ZIMXeggNOG:KOG2619EMBL:AC021665EMBL:AJ404862
EMBL:AY026941EMBL:CP002684EnsemblPlants:AT1G71990EnsemblPlants:AT1G71990.1
entrez:843530ExpressionAtlas:Q9C8W3GeneID:843530Genevisible:Q9C8W3
GO:GO:0006486GO:GO:0008417GO:GO:0010493GO:GO:0016021
GO:GO:0032580GO:GO:0036065GO:GO:0071555Gramene:AT1G71990.1
hmmpanther:PTHR11929hmmpanther:PTHR11929:SF131HOGENOM:HOG000240813InParanoid:Q9C8W3
InterPro:IPR001503InterPro:IPR017177KEGG:00051+2.4.1.-KEGG:00512+2.4.1.-
KEGG:00513+2.4.1.-KEGG:00514+2.4.1.-KEGG:00522+2.4.1.-KEGG:00533+2.4.1.-
KEGG:00540+2.4.1.-KEGG:00550+2.4.1.-KEGG:00561+2.4.1.-KEGG:00563+2.4.1.-
KEGG:00600+2.4.1.-KEGG:00601+2.4.1.-KEGG:00603+2.4.1.-KEGG:00604+2.4.1.-
KEGG:00906+2.4.1.-KEGG:00908+2.4.1.-KEGG:00941+2.4.1.-KEGG:00942+2.4.1.-
KEGG:00944+2.4.1.-KEGG:00945+2.4.1.-KEGG:00965+2.4.1.-KEGG:ath:AT1G71990
KO:K14412OMA:ELKMEHVPANTHER:PTHR11929PaxDb:Q9C8W3
Pfam:PF00852Pfam:Q9C8W3PhylomeDB:Q9C8W3PIR:H96742
PIRSF:PIRSF037334PRIDE:Q9C8W3PRO:PR:Q9C8W3ProteinModelPortal:Q9C8W3
Proteomes:UP000006548Reactome:R-ATH-975578RefSeq:NP_177344.2SMR:Q9C8W3
STRING:3702.AT1G71990.1SUPFAM:SSF53756TAIR:AT1G71990tair10-symbols:ATFT4
tair10-symbols:ATFUT13tair10-symbols:FT4-Mtair10-symbols:FUCTCtair10-symbols:FUT13
TMHMM:TMhelixUniGene:At.22334UniPathway:UPA00378UniProt:Q0V7Y9
UniProt:Q9C8W3
Coordinates (TAIR10) chr1:+:27100345..27102097
Molecular Weight (calculated) 45100.90 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.24
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MPMRYLNAMA ALLMMFFTLL ILSFTGILEF PSASTSMEHS IDPEPKLSDS TSDPFSDVLV AYKKWDFEVG CARFRENHKD AILGNVSSGS LQEFGCGKLK
101: MKHVKVLVKG WTWIPDNLEN LYSCRCGMTC LWTKSSVLAD SPDALLFETT TPPLQRRVGD PLRVYMELEA GRKRSGREDI FISYHAKDDV QTTYAGSLFH
201: NNRNYHISPH KNNDVLVYWS SSRCLPHRDR LAKSLLDLIP HHSFGKCLNN VGGLDSALSM YPECVAEHNA EAKWYDHLHC AMSHYKFVLA IENTAVESYV
301: TEKLFYALDS GSVPIYFGAS NVQDFVPPHS VIDGSKFGSM QELAAYVKRL GDDPVAYSEY HAWRRCGLMG NYGKTRAVSL DTLPCRLCEE ISRRGGKNAG
401: V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)