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AT2G30370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.968
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : allergen-related
Curator
Summary (TAIR10)
Encodes a small, potentially secreted protein that acts as an inhibitor of stomatal production though likely not through direct interaction with the TMM receptor. It is homologous to known stomatal regulators EPF1 and EPF2.
Computational
Description (TAIR10)
CHALLAH (CHAL); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14723.1); Has 273 Blast hits to 271 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3U1eggNOG:ENOG410Z4SMEMBL:CP002685EnsemblPlants:AT2G30370
EnsemblPlants:AT2G30370.1entrez:817587ExpressionAtlas:F4IMT0GeneID:817587
GO:GO:0010052GO:GO:0016021GO:GO:2000122Gramene:AT2G30370.1
hmmpanther:PTHR33109hmmpanther:PTHR33109:SF2OMA:HEDKDSTPaxDb:F4IMT0
PRIDE:F4IMT0ProteinModelPortal:F4IMT0Proteomes:UP000006548RefSeq:NP_850143.1
STRING:3702.AT2G30370.1TAIR:AT2G30370tair10-symbols:CHALtair10-symbols:EPFL6
TMHMM:TMhelixUniGene:At.52976UniProt:F4IMT0
Coordinates (TAIR10) chr2:-:12940577..12942167
Molecular Weight (calculated) 25445.90 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.21
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFERTSSSL SLLSSSLPSS LQPSENTRAK FSLFYLLLLF FVLCVIATFT ITPTSTSSPY NRNSNSGTLG NFYAKVRKLF IPLTLLRDLT ISDCDGMSRL
101: TGHAEMPCTP KEILSRRIGF SAHEDKDSTQ LLVRSPLVGP CLAYDLDRVE EGKSTVVIKK TRKIGDRSKE AELRRILRGL GSSPPRCSSK CGRCTPCKPV
201: HVPVPPGTPV TAEYYPEAWR CKCGNKLYMP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)