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AT4G11640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.958
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine racemase
Curator
Summary (TAIR10)
Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases.
Computational
Description (TAIR10)
serine racemase (SR); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: L-O-methylthreonine resistant 1 (TAIR:AT3G10050.1); Has 19715 Blast hits to 19705 proteins in 2624 species: Archae - 539; Bacteria - 13612; Metazoa - 549; Fungi - 719; Plants - 186; Viruses - 2; Other Eukaryotes - 4108 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G11640-MONOMERBioCyc:MetaCyc:MONOMER-14684BRENDA:5.1.1.18EC:4.3.1.17
EC:4.3.1.18EC:5.1.1.18eggNOG:COG1171eggNOG:KOG1251
EMBL:AB206823EMBL:AL049500EMBL:AL161532EMBL:CP002687
EnsemblPlants:AT4G11640EnsemblPlants:AT4G11640.1entrez:826769GeneID:826769
Genevisible:Q2PGG3GO:GO:0003941GO:GO:0005524GO:GO:0006563
GO:GO:0008721GO:GO:0009069GO:GO:0030170GO:GO:0030378
GO:GO:0046872GO:GO:0070178GO:GO:0070179Gramene:AT4G11640.1
gramene_pathway:4.3.1.18gramene_pathway:5.1.1.18gramene_pathway:PWY-6196hmmpanther:PTHR10314
hmmpanther:PTHR10314:SF36HOGENOM:HOG000046974InParanoid:Q2PGG3InterPro:IPR000634
InterPro:IPR001926KEGG:ath:AT4G11640KO:K12235OMA:SNADDCY
PaxDb:Q2PGG3Pfam:PF00291Pfam:Q2PGG3PhylomeDB:Q2PGG3
PIR:T04211PRIDE:Q2PGG3PRO:PR:Q2PGG3PROSITE:PS00165
ProteinModelPortal:Q2PGG3Proteomes:UP000006548RefSeq:NP_192901.2scanprosite:PS00165
SMR:Q2PGG3STRING:3702.AT4G11640.1SUPFAM:SSF53686TAIR:AT4G11640
tair10-symbols:ATSRtair10-symbols:SRUniGene:At.33551UniProt:Q2PGG3
Coordinates (TAIR10) chr4:+:7021770..7023252
Molecular Weight (calculated) 35070.40 Da
IEP (calculated) 7.36
GRAVY (calculated) 0.11
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MEANREKYAA DILSIKEAHD RIKPYIHRTP VLTSESLNSI SGRSLFFKCE CLQKGGAFKF RGACNAVLSL DAEQAAKGVV THSSGNHAAA LSLAAKIQGI
101: PAYIVVPKGA PKCKVDNVIR YGGKVIWSEA TMSSREEIAS KVLQETGSVL IHPYNDGRII SGQGTIALEL LEQIQEIDAI VVPISGGGLI SGVALAAKSI
201: KPSIRIIAAE PKGADDAAQS KVAGKIITLP VTNTIADGLR ASLGDLTWPV VRDLVDDVVT LEECEIIEAM KMCYEILKVS VEPSGAIGLA AVLSNSFRNN
301: PSCRDCKNIG IVLSGGNVDL GSLWDSFKSS K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)