AT3G28760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 390 Blast hits to 390 proteins in 131 species: Archae - 144; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10793126..10795304 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47050.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.16 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||
| Length | 422 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALPLVSSVS YIKSSNQFHC SFSLRKERLE LDRLLLWSSH QKIRFSKRTF SQRIVVKMSA STLPMNLGKA KKVWIWTMCK EVMTVAVERG WNTFIFSSDN 101: RKLSNEWSSI ALMDTLFIEE KKVIDGTGNV VASVFEVSTP EELRSLNIEN EQIENIVLDF LDWKSIPAEN LVAALQGSEK TVFAVSNTPS EAKLFLEALE 201: HGLGGIILKS EDVKAVLDLK EYFDKRNEES DTLSLTEATI TRVQMVGMGD RVCVDLCSLM RPGEGLLVGS FARGLFLVHS ECLESNYIES RPFRVNAGPV 301: HAYVAVPGGK TCYLSELRTG REVIVVDQKG KQRTAVVGRV KIEKRPLIVV EAKLSTKEEE TVYSIILQNA ETVALVTPHQ VNSSGRTAVP VTSLKPGDQV 401: LIRLQGGARH TGIEIQEFIV EN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)