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AT3G10270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA GYRASE B1
Curator
Summary (TAIR10)
Protein targeting to mitochondria is influenced by UTR sequences.
Computational
Description (TAIR10)
DNA GYRASE B1 (GYRB1); FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid, cytoplasm; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241), DNA topoisomerase, type IIA, subunit B, C-terminal (InterPro:IPR002288), DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta (InterPro:IPR013759), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 32428 Blast hits to 29720 proteins in 6857 species: Archae - 109; Bacteria - 22797; Metazoa - 200; Fungi - 238; Plants - 123; Viruses - 106; Other Eukaryotes - 8855 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G10270EnsemblPlants:AT3G10270.1entrez:820189hmmpanther:PTHR10169
hmmpanther:PTHR10169:SF35Pfam:PF00204Pfam:PF00986Pfam:PF01751
Pfam:PF02518Pfscan:PS50880scanprosite:PS00177tair10-symbols:GYRB1
Coordinates (TAIR10) chr3:-:3173805..3179756
Molecular Weight (calculated) 85854.80 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.30
Length 772 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLTVTINSS MALVQRQHSY LLRYFRLMAS RPRPRLFSHS LYPSLHRHSS ALSSSTPRIK FQLANVFSQR LVQRNAVSPK SFMSSTMESL QESSTSKDYS
101: SEHIQVLEGL DPVRKRPGMY IGSTGSRGLH HLVYEILDNA IDEAQAGFAS KIDVVLHSDD SVSISDNGRG IPTDLHPATG KSSLETVLTV LHAGGKFGGK
201: SSGYSVSGGL HGVGLSVVNA LSEALEVIVR RDGMEFQQKY SRGKPVTTLT CHVLPPESRG TQGTCIRFWP DKEVFTTAIQ FDHNTIAGRI RELAFLNPKV
301: TISLKKEDDD PERDVYSEYF YAGGLTEYVS WLNTDKKPLH DVLGFRKEIN GSTVDVSLQW CSDAYSDTML GYANSIRTID GGTHIEGVKA SLTRTLNSLA
401: KKLKVIKVKG YIIYSSPWIE TKFKYSSALK RHALRTINNE KDISLSGEHV REGLTCIVSV KVPNPEFEGQ TKTRLGNPEV RKIVDQSVQE YLTEYLELHP
501: DVLESIISKS LNAYKAALAA KRARELVRSK SVLKSSSLPG KLADCSSTDP AESEIFIVEG DSAGGSAKQG RDRRFQAILP LRGKILNIER KDEAAMYKNE
601: EIQNLILGLG LGVKGEDFNK ENLRYHKIII LTDADVDGAH IRTLLLTFFF RYQRALFDAG CIYVGVPPLF KVERGKQAHY CYDDAALKKI TASFPGNASY
701: NIQRFKGLGE MMPAQLWETT MNPDTRILKQ LVVDDAAETN MVFSSLMGAR VDVRKELIKS AATRMNLENL DI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)