AT1G23180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1); Has 2470 Blast hits to 1640 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 613; Fungi - 372; Plants - 1309; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8216125..8219515 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91698.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.09 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||
| Length | 834 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLSTIASGI GVLELPCLRL LPISSTQIQF LTVEARKQSR RIRRERSFSP FPVLIQSNRR LRHGFSELNS SFDRSNSGET GSDTTLKDGE EVRSESSSGV 101: GDSYVGLFVG MLGLDNDPLD REQAIETLWK YSLGGKKCID AIMQFHGCLN LIVNLLKSES SSACEAAAGL IRSIASVNLY RESVAESGAL EEITALLSRP 201: SLATVVKEQC ICALWNLTVD EEIREKVADF DILRLLISFL EDDDVNVKEA AGGVLANLAL SRSTHKILVE VGVIPKLAKL LKADNTENKG SKVIRKEARN 301: VLLELAKDEY YRILVIEEGV VPIPIIGADA YKSFRPDLYS WPSLPDGINI EQTAKAPSRF GASELLLGLN VDKNVDDVDE AKMKAIVGRT NQQFLARIGA 401: IEFEKEIKSE GPGKSQQLTL LPCVDGVARL VLILGLADEL AATRAAESIA DASINEDMRV SFMEAGAVKP LVQLLANNNK ETVKLPVIRA LKNLSLSRTV 501: CQRIEAEGAV WFLINLLKQP EISLNVTEHV LDIIAHILDP SKEMESKFYE GPVNGSKADS RKEVLDAAVF SRLVQIAKTA SPNLLRNAIS VIEFGIISNP 601: NMDTIISKDI TTVLDLALRQ KVLEEPENEA EELEKHLLKL EEAGLTISAA SRLLTKLLDS ESFRQTIDTA VFIELVRKIL RSSLPLHYKD WVAACLVKLT 701: ALSSPSQSLN NPINLEVTLY KTIPSLVEQM SFSSSPETKE AAVLELNKIV SEGVPESIQT LASQGGIEPL VKLLEERNER CVEASLSVLY NLTMDSENHT 801: AIIRAGAVPV LRRIVMSQRP QWEKALRLLR NLPV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)