AT3G16290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AAA-type ATPase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2083 (EMB2083); FUNCTIONS IN: in 8 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 40436 Blast hits to 36159 proteins in 3226 species: Archae - 1511; Bacteria - 13353; Metazoa - 6817; Fungi - 4228; Plants - 3474; Viruses - 31; Other Eukaryotes - 11022 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5521187..5524995 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99870.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 876 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MACRFPLHSS SPSQFLSPEN RQRLPRNYPS ISCQNNSATN VVHEDGDDND KAKTNQVNLL AIPITLTIIS ASLAKPSFAA AKVTERKRTQ KKPQEALTLE 101: QLKAWSKDLP VVSNRIPYTD ILSLKAEGKL KHVIKPPNLS LRQKAEPVLV VLEDSRVLRT VLPSLEGNKR FWEQWDELGI DVQCVNAYTP PVKRPPVPSP 201: YLGFLWKVPA YMLTWVKPKK ESKRAAELKR MREDFKRQRK EEIETMKEER VMMEKTMKAQ KKQQERKKRK AVRKKKYEES LREARKNYRD MADMWARLAQ 301: DPNVATALGL VFFYIFYRVV VLNYRKQKKD YEDRLKIEKA EADERKKMRE LEREMEGIEE EDEEVEEGTG EKNPYLQMAM QFMKSGARVR RASNKRLPEY 401: LERGVDVKFT DVAGLGKIRL ELEEIVKFFT HGEMYRRRGV KIPGGILLCG PPGVGKTLLA KAVAGEAGVN FFSISASQFV EIYVGVGASR VRALYQEARE 501: NAPSVVFIDE LDAVGRERGL IKGSGGQERD ATLNQLLVSL DGFEGRGEVI TIASTNRPDI LDPALVRPGR FDRKIFIPKP GLIGRMEILQ VHARKKPMAE 601: DLDYMAVASM TDGMVGAELA NIVEIAAINM MRDGRTELTT DDLLQAAQIE ERGMLDRKDR SLETWRQVAI NEAAMAVVAV NFPDMKNIEF LTINPRAGRE 701: LGYVRVKMDH IKFKEGMLSR QSILDHITVQ LAPRAADELW YGEDQLSTIW AETSDNARSA ARSLVLGGLS DKHHGLNNFW VADRINDIDV EALRILNMCY 801: ERAKEILGRN RTLMDEVVEK LVQKKSLTKQ EFFTLVELYG SSKPMPPSIL ELRKIKRLEL EEMVLKLDMT TARNSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)