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AT2G32230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 0.500
plastid 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proteinaceous RNase P 1
Curator
Summary (TAIR10)
RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs.
Computational
Description (TAIR10)
proteinaceous RNase P 1 (PRORP1); CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: proteinaceous RNase P 3 (TAIR:AT4G21900.1); Has 2190 Blast hits to 1686 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 4; Plants - 1945; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).
Protein Annotations
EC:3.1.26.5eggNOG:COG0534eggNOG:KOG1347EMBL:AC006223
EMBL:AY091059EMBL:BT015418EMBL:CP002685EnsemblPlants:AT2G32230
EnsemblPlants:AT2G32230.1entrez:817782GeneID:817782GO:GO:0001682
GO:GO:0004526GO:GO:0005739GO:GO:0008033GO:GO:0009507
GO:GO:0090501GO:GO:0090502Gramene:AT2G32230.1hmmpanther:PTHR13547
hmmpanther:PTHR13547:SF3HOGENOM:HOG000006117InParanoid:Q66GI4InterPro:IPR002885
InterPro:IPR031595InterPro:IPR033443KEGG:ath:AT2G32230KO:K18213
OMA:KLDMCSRPaxDb:Q66GI4PDB:4G23PDB:4G24
PDB:4G25PDB:4G26PDBsum:4G23PDBsum:4G24
PDBsum:4G25PDBsum:4G26Pfam:PF01535Pfam:PF13812
Pfam:PF16953Pfam:PF17177Pfam:Q66GI4Pfscan:PS51375
PhylomeDB:Q66GI4PIR:E84730PRIDE:Q66GI4PRO:PR:Q66GI4
PROSITE:PS51375ProteinModelPortal:Q66GI4Proteomes:UP000006548RefSeq:NP_850186.1
SMR:Q66GI4STRING:3702.AT2G32230.1TAIR:AT2G32230tair10-symbols:PRORP1
UniGene:At.38106UniProt:Q66GI4
Coordinates (TAIR10) chr2:-:13679608..13681756
Molecular Weight (calculated) 64880.30 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.41
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRLTCFTPS FSRACCPLFA MMLKVPSVHL HHPRFSPFRF YHTSLLVKGT RDRRLILVER SRHLCTLPLA AAKQSAASPS ENLSRKAKKK AIQQSPEALL
101: KQKLDMCSKK GDVLEALRLY DEARRNGVQL SQYHYNVLLY VCSLAEAATE SSPNPGLSRG FDIFKQMIVD KVVPNEATFT NGARLAVAKD DPEMAFDMVK
201: QMKAFGIQPR LRSYGPALFG FCRKGDADKA YEVDAHMVES EVVPEEPELA ALLKVSMDTK NADKVYKTLQ RLRDLVRQVS KSTFDMIEEW FKSEVATKTG
301: VKKWDVKKIR DAVVSGGGGW HGQGWLGTGK WNVKRTEMDE NGVCKCCKEK LVCIDINPVE TETFAASLTR LACEREVKAN FNQFQEWLER HGPFDAVIDG
401: ANMGLVNQRS FSFFQLNNTV QRCQQISPSK RLPLVILHKS RVNGGPATYP KNRALLEKWK NAGALYATPP GSNDDWYWLY AAVSCKCLLV TNDEMRDHLF
501: QLLGNSFFPR WKEKHQVRIS VTREDGLKLN MPPPYSIVIQ ESEDGTWHVP MSVEDDLQTS RQWLCAKRSK TP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)