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AT5G39830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:11719511 (2002): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At5g39830-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DegP protease 8; Trypsin family protein with PDZ domain
Curator
Summary (TAIR10)
Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.
Computational
Description (TAIR10)
DEG8; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1789-MONOMERBioCyc:ARA:GQT-337-MONOMEREC:3.4.21.-eggNOG:COG0265
eggNOG:KOG1320EMBL:AB024023EMBL:AY056381EMBL:AY090319
EMBL:CP002688EnsemblPlants:AT5G39830EnsemblPlants:AT5G39830.1entrez:833979
ExpressionAtlas:Q9LU10Gene3D:2.30.42.10GeneID:833979Genevisible:Q9LU10
GO:GO:0004252GO:GO:0006508GO:GO:0008233GO:GO:0009507
GO:GO:0009534GO:GO:0009543GO:GO:0009579GO:GO:0010206
GO:GO:0031977hmmpanther:PTHR22939hmmpanther:PTHR22939:SF99HOGENOM:HOG000223641
InParanoid:Q9LU10InterPro:IPR001478InterPro:IPR001940InterPro:IPR009003
KEGG:ath:AT5G39830MEROPS:S01.474OMA:IQFGKVRPaxDb:Q9LU10
PDB:4IC6PDBsum:4IC6Pfam:PF13180Pfam:PF13365
Pfam:Q9LU10PhylomeDB:Q9LU10PRIDE:Q9LU10PRINTS:PR00834
PRO:PR:Q9LU10ProteinModelPortal:Q9LU10Proteomes:UP000006548RefSeq:NP_568575.1
SMART:SM00228SMR:Q9LU10STRING:3702.AT5G39830.1SUPFAM:SSF50156
SUPFAM:SSF50494TAIR:AT5G39830tair10-symbols:DEG8tair10-symbols:DEGP8
UniGene:At.22069UniProt:Q9LU10
Coordinates (TAIR10) chr5:+:15942883..15945676
Molecular Weight (calculated) 47495.40 Da
IEP (calculated) 8.59
GRAVY (calculated) 0.05
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE
101: DVSPTVFPAG PLFPTEGRIV QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW DGQGYIVTNY HVIGNALSRN PSPGDVVGRV NILASDGVQK
201: NFEGKLVGAD RAKDLAVLKV DAPETLLKPI KVGQSNSLKV GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG IQTDAAINPG NSGGPLLDSK
301: GNLIGINTAI FTQTGTSAGV GFAIPSSTVL KIVPQLIQFS KVLRAGINIE LAPDPVANQL NVRNGALVLQ VPGKSLAEKA GLHPTSRGFA GNIVLGDIIV
401: AVDDKPVKNK AELMKILDEY SVGDKVTLKI KRGNEDLELK ISLEEKSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)