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AT5G04360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : limit dextrinase
Curator
Summary (TAIR10)
Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.
Computational
Description (TAIR10)
limit dextrinase (LDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1); Has 6260 Blast hits to 6253 proteins in 1613 species: Archae - 73; Bacteria - 5462; Metazoa - 45; Fungi - 1; Plants - 262; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04360-MONOMERCAZy:CBM48CAZy:GH13EC:3.2.1.142
eggNOG:COG1523eggNOG:ENOG410IN7NEMBL:BT002411EMBL:CP002688
EnsemblPlants:AT5G04360EnsemblPlants:AT5G04360.1entrez:830315Gene3D:2.60.40.10
Gene3D:3.20.20.80GeneID:830315Genevisible:Q8GTR4GO:GO:0005983
GO:GO:0009507GO:GO:0009570GO:GO:0010303GO:GO:0019252
GO:GO:0051060Gramene:AT5G04360.1gramene_pathway:3.2.1.41gramene_pathway:PWY-842
hmmpanther:PTHR10357hmmpanther:PTHR10357:SF99HOGENOM:HOG000251916InParanoid:Q8GTR4
InterPro:IPR004193InterPro:IPR011839InterPro:IPR013781InterPro:IPR013783
InterPro:IPR014756InterPro:IPR015902InterPro:IPR017853InterPro:IPR024561
KEGG:ath:AT5G04360OMA:ANTARIHPANTHER:PTHR10357PaxDb:Q8GTR4
Pfam:PF02922Pfam:PF11852Pfam:Q8GTR4PRIDE:Q8GTR4
PRO:PR:Q8GTR4ProteinModelPortal:Q8GTR4Proteomes:UP000006548RefSeq:NP_196056.2
SMR:Q8GTR4STRING:3702.AT5G04360.1SUPFAM:SSF51011SUPFAM:SSF51445
SUPFAM:SSF81296TAIR:AT5G04360tair10-symbols:ATLDAtair10-symbols:ATPU1
tair10-symbols:LDAtair10-symbols:PU1TIGRfam:TIGR02103TIGRFAMs:TIGR02103
UniGene:At.26109UniPathway:UPA00152UniPathway:UPA00153UniProt:Q8GTR4
Coordinates (TAIR10) chr5:+:1221566..1228399
Molecular Weight (calculated) 107072.00 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.30
Length 965 amino acids
Sequence (TAIR10)
(BLAST)
001: MALTLTPTSS VHLLSSISVA RPRIFAADFN LRSRWRRRRP VTSISNFRLR LPSKTSLHCL CSSSSASSPM SLEVSSPNSQ FLDCLIYSRA YWVTQGVIAW
101: NVDVGEGSCY FYASKSAGLS FSEDGIDGYD LRIKLEAESG SLPADVIEKF PHIRNYKSFK VPKDLDIRDL VKSQLAVVCF DAEGRLIQGT GLQLPGVLDE
201: LFSYDGPLGA HFTPEGVSLH LWAPTAQAVS VCIYKNPLDK SPMEICPLKE ANGVWSTEGA CSWGGCYYVY KVSVYHPSTM KLETCYANDP YARGLSADGR
301: KTFLVNLDSD DLKPEGWDNL ADKKPCLRSF SDISIYELHV RDFSANDETV EPENRGGYLA FTSKDSAGVK HLQKLVDAGL THLHLLPTFQ FGDVDDEKEN
401: WKSVDTSLLE GLRPDSTEAQ ARITEIQNDD GYNWGYNPVL WGVPKGSYAS DPTGPCRIIE FRKMVQALNC TGLNVVLDVV YNHLHASGPH DKESVLDKIV
501: PGYYLRRNSD GFIENSTCVN NTASEHYMVD RLIRDDLLNW VVNYKVDGFR FDLMGHIMKA TIVNAKSAIG SLRKETDGVD GSRIYLYGEG WNFGEVAENG
601: RGINASQFNL GGTGIGSFND RIRDATLGGS PFGHPLQQGF ITGLLLQPNA HDHGSEATQE LMLSTAKNHI QTGMAANLKD YMLTNHEGKE VKGSEVLMHD
701: ATPVAYASLP TETINYVSAH DNETLFDIIS LKTPMEISVD ERCRINHLAS SMIALSQGIP FFHAGDEILR SKSLDRDSYN SGDWFNRLDF SYSSNNWGVG
801: LPPKGKNEHN WPLIKPRLQD PSFKPKSSHI VATLHNFLDL LRIRYSSPLF RLDTARAIQE RVRFHNTGPS SIPGAIVMSI EDGHRGIPSV SQIDPIYSLI
901: VVIFNARPSE FSYPSPALKD RKLELHPVQV MSADEIVKKS VYDSFSGGFT VPARTTTVFV ESRNG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)