AT2G42130.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : Plastid-lipid associated protein PAP / fibrillin family protein | ||||||||
| Curator Summary (TAIR10) |
|||||||||
| Computational Description (TAIR10) |
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastoglobulin 34kD (TAIR:AT3G58010.1); Has 81 Blast hits to 81 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr2:+:17566242..17567651 | ||||||||
| Molecular Weight (calculated) | 29833.50 Da | ||||||||
| IEP (calculated) | 10.27 | ||||||||
| GRAVY (calculated) | -0.01 | ||||||||
| Length | 270 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MALIHGSVPG TSAVRLVFST SASPSRFCLN VPVVKQGWKN SCRRRVLRAM VQETVQGSPL VYAREMERLS AKESLLLALK DAGGFEALVT GKTTNMQRID 101: VNERITSLER LNPTPRPTTS PCFEGRWNFE WFGSGSPGLL AARVIFERFP STLANLSRME ILIKDANAKA TANIKLLNSI ESKIILSSKL TVEGPLRLKE 201: EYVEGMLETP TVIEEAVPEQ LKSALGQAAT TLQQLPALIK DTLASGLRIP LSKLLYPFFI HLTIFRSNLH |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)